HCSGD entry for CDH4
1. General information
| Official gene symbol | CDH4 |
|---|---|
| Entrez ID | 1002 |
| Gene full name | cadherin 4, type 1, R-cadherin (retinal) |
| Other gene symbols | CAD4 RCAD |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IDA TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | IEA | cellular_component |
| GO:0007155 | Cell adhesion | TAS | biological_process |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0007157 | Heterophilic cell-cell adhesion | IEA | biological_process |
| GO:0007411 | Axon guidance | IEA | biological_process |
| GO:0034329 | Cell junction assembly | TAS | biological_process |
| GO:0034332 | Adherens junction organization | TAS | biological_process |
| GO:0045216 | Cell-cell junction organization | TAS | biological_process |
| GO:0045773 | Positive regulation of axon extension | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9909765700 | 0.0211331180 | 0.9999902473 | 0.2810736736 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2142468227 |
| GSE13712_SHEAR | Down | -0.0700978074 |
| GSE13712_STATIC | Down | -0.0647601485 |
| GSE19018 | Up | 0.0238738524 |
| GSE19899_A1 | Down | -0.2129885722 |
| GSE19899_A2 | Down | -0.6886487806 |
| PubMed_21979375_A1 | Down | -0.5111837946 |
| PubMed_21979375_A2 | Down | -0.3327299536 |
| GSE35957 | Up | 0.0655175605 |
| GSE36640 | Down | -0.4364606447 |
| GSE54402 | Down | -0.3147000786 |
| GSE9593 | Down | -0.0400690654 |
| GSE43922 | Down | -0.7168615486 |
| GSE24585 | Down | -0.0389704496 |
| GSE37065 | Down | -0.1897092754 |
| GSE28863_A1 | Down | -0.1898427299 |
| GSE28863_A2 | Down | -0.1585006968 |
| GSE28863_A3 | Up | 0.2032545567 |
| GSE28863_A4 | Up | 0.0144848761 |
| GSE48662 | Down | -0.8440815256 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT023656 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
