HCSGD entry for GPC6
1. General information
| Official gene symbol | GPC6 |
|---|---|
| Entrez ID | 10082 |
| Gene full name | glypican 6 |
| Other gene symbols | OMIMD1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001523 | Retinoid metabolic process | TAS | biological_process |
| GO:0005578 | Proteinaceous extracellular matrix | IEA | cellular_component |
| GO:0005615 | Extracellular space | IEA | cellular_component |
| GO:0005796 | Golgi lumen | TAS | cellular_component |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0005975 | Carbohydrate metabolic process | TAS | biological_process |
| GO:0006024 | Glycosaminoglycan biosynthetic process | TAS | biological_process |
| GO:0006027 | Glycosaminoglycan catabolic process | TAS | biological_process |
| GO:0007603 | Phototransduction, visible light | TAS | biological_process |
| GO:0016477 | Cell migration | IDA | biological_process |
| GO:0030203 | Glycosaminoglycan metabolic process | TAS | biological_process |
| GO:0030204 | Chondroitin sulfate metabolic process | TAS | biological_process |
| GO:0031225 | Anchored component of membrane | IEA | cellular_component |
| GO:0043202 | Lysosomal lumen | TAS | cellular_component |
| GO:0043395 | Heparan sulfate proteoglycan binding | IEA | molecular_function |
| GO:0044281 | Small molecule metabolic process | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9743796930 | 0.0002197637 | 0.9999902473 | 0.0258772321 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.3262955986 |
| GSE13712_SHEAR | Down | -0.0704359446 |
| GSE13712_STATIC | Up | 0.0460089949 |
| GSE19018 | Down | -0.5644016461 |
| GSE19899_A1 | Down | -1.0286764347 |
| GSE19899_A2 | Down | -3.3269734520 |
| PubMed_21979375_A1 | Down | -2.0526503988 |
| PubMed_21979375_A2 | Down | -2.7202605622 |
| GSE35957 | Down | -0.3921726024 |
| GSE36640 | Down | -2.6747030793 |
| GSE54402 | Down | -2.2788674442 |
| GSE9593 | Up | 0.2049160588 |
| GSE43922 | Down | -1.7074311831 |
| GSE24585 | Down | -0.3363679831 |
| GSE37065 | Down | -0.2654611352 |
| GSE28863_A1 | Up | 0.5518244166 |
| GSE28863_A2 | Up | 0.1901250060 |
| GSE28863_A3 | Down | -0.4787442378 |
| GSE28863_A4 | Up | 0.1367795167 |
| GSE48662 | Down | -0.1944769237 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-361-5p | MIMAT0000703 | MIRT044098 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
