HCSGD entry for RBM5
1. General information
| Official gene symbol | RBM5 |
|---|---|
| Entrez ID | 10181 |
| Gene full name | RNA binding motif protein 5 |
| Other gene symbols | G15 LUCA15 RMB5 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000245 | Spliceosomal complex assembly | IDA | biological_process |
| GO:0000381 | Regulation of alternative mRNA splicing, via spliceosome | IDA | biological_process |
| GO:0000398 | MRNA splicing, via spliceosome | TAS | biological_process |
| GO:0003677 | DNA binding | TAS | molecular_function |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0003729 | MRNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0006915 | Apoptotic process | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0008285 | Negative regulation of cell proliferation | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0043065 | Positive regulation of apoptotic process | IDA TAS | biological_process |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9366953991 | 0.0632799932 | 0.9999902473 | 0.4742576025 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0930074728 |
| GSE13712_SHEAR | Down | -0.0929003525 |
| GSE13712_STATIC | Down | -0.1155011947 |
| GSE19018 | Down | -0.2569284273 |
| GSE19899_A1 | Down | -0.3333190991 |
| GSE19899_A2 | Down | -0.3277953809 |
| PubMed_21979375_A1 | Down | -1.2352120845 |
| PubMed_21979375_A2 | Down | -0.3115366584 |
| GSE35957 | Down | -0.4012085051 |
| GSE36640 | Down | -0.0197578943 |
| GSE54402 | Down | -0.1192215158 |
| GSE9593 | Down | -0.2612907701 |
| GSE43922 | Down | -0.1947261811 |
| GSE24585 | Up | 0.5463751447 |
| GSE37065 | Down | -0.0029278728 |
| GSE28863_A1 | Up | 0.4961787360 |
| GSE28863_A2 | Up | 0.1025575798 |
| GSE28863_A3 | Down | -0.1585917057 |
| GSE28863_A4 | Down | -0.1540979636 |
| GSE48662 | Down | -0.1162565983 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028583 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-320b | MIMAT0005792 | MIRT036197 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT045057 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-3p | MIMAT0000071 | MIRT050746 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-17-5p | MIMAT0000070 | MIRT050882 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
