HCSGD entry for YKT6
1. General information
| Official gene symbol | YKT6 |
|---|---|
| Entrez ID | 10652 |
| Gene full name | YKT6 v-SNARE homolog (S. cerevisiae) |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0000149 | SNARE binding | IBA | molecular_function |
| GO:0005484 | SNAP receptor activity | IDA | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005739 | Mitochondrion | IDA | cellular_component |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005829 | Cytosol | IEA | cellular_component |
| GO:0005887 | Integral component of plasma membrane | IDA | cellular_component |
| GO:0006810 | Transport | IEA | biological_process |
| GO:0006888 | ER to Golgi vesicle-mediated transport | IDA | biological_process |
| GO:0006903 | Vesicle targeting | IDA | biological_process |
| GO:0006904 | Vesicle docking involved in exocytosis | IDA | biological_process |
| GO:0006906 | Vesicle fusion | IBA | biological_process |
| GO:0008152 | Metabolic process | IDA | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0019706 | Protein-cysteine S-palmitoyltransferase activity | IDA | molecular_function |
| GO:0030659 | Cytoplasmic vesicle membrane | IEA | cellular_component |
| GO:0031201 | SNARE complex | ISS TAS | cellular_component |
| GO:0042147 | Retrograde transport, endosome to Golgi | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0484452224 | 0.7885580791 | 0.4864270209 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.8962332354 |
| GSE13712_SHEAR | Up | 0.4022274922 |
| GSE13712_STATIC | Up | 0.2658914282 |
| GSE19018 | Down | -0.0741301369 |
| GSE19899_A1 | Up | 0.2901307779 |
| GSE19899_A2 | Up | 0.9206494500 |
| PubMed_21979375_A1 | Up | 0.3056694242 |
| PubMed_21979375_A2 | Down | -0.1011049431 |
| GSE35957 | Down | -0.1946249609 |
| GSE36640 | Up | 0.3556278328 |
| GSE54402 | Up | 0.5330057016 |
| GSE9593 | Up | 0.2066150026 |
| GSE43922 | Up | 0.1828922255 |
| GSE24585 | Down | -0.0200734759 |
| GSE37065 | Down | -0.2160562053 |
| GSE28863_A1 | Down | -0.3063345176 |
| GSE28863_A2 | Up | 0.0620679868 |
| GSE28863_A3 | Down | -0.3506452460 |
| GSE28863_A4 | Down | -0.1681387397 |
| GSE48662 | Up | 0.0872552081 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-132-3p | MIMAT0000426 | MIRT021756 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022550 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-122-5p | MIMAT0000421 | MIRT023323 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-1296-5p | MIMAT0005794 | MIRT036097 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-708-5p | MIMAT0004926 | MIRT037749 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-30d-5p | MIMAT0000245 | MIRT047824 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
