HCSGD entry for ZNF488

1. General information

Official gene symbolZNF488
Entrez ID118738
Gene full namezinc finger protein 488
Other gene symbols
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000981Sequence-specific DNA binding RNA polymerase II transcription factor activityIBAmolecular_function
GO:0003677DNA bindingIEAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIBA IEAcellular_component
GO:0006357Regulation of transcription from RNA polymerase II promoterIBAbiological_process
GO:0006366Transcription from RNA polymerase II promoterIBAbiological_process
GO:0014003Oligodendrocyte developmentIBA IEAbiological_process
GO:0045892Negative regulation of transcription, DNA-templatedIEAbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
GO:0048714Positive regulation of oligodendrocyte differentiationIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.41230843810.83383846740.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.1533399129
GSE13712_SHEARUp0.0114723175
GSE13712_STATICDown-0.0109961599
GSE19018Up0.1338980579
GSE19899_A1Up0.1431614152
GSE19899_A2Down-0.0816305951
PubMed_21979375_A1Down-0.0912452885
PubMed_21979375_A2Down-0.0362807407
GSE35957Up0.0772755794
GSE36640Down-0.0730950819
GSE54402Up0.0757856681
GSE9593Down-0.1413027329
GSE43922Up0.1099785853
GSE24585Up0.0934106272
GSE37065Up0.0036644209
GSE28863_A1Down-0.0405108428
GSE28863_A2Up0.0019510565
GSE28863_A3Up0.3463192384
GSE28863_A4Up0.2747840831
GSE48662Up0.1161956262

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-18a-3pMIMAT0002891MIRT040838CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.