HCSGD entry for SYNPR
1. General information
| Official gene symbol | SYNPR |
|---|---|
| Entrez ID | 132204 |
| Gene full name | synaptoporin |
| Other gene symbols | SPO |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005215 | Transporter activity | IEA | molecular_function |
| GO:0008021 | Synaptic vesicle | IEA | cellular_component |
| GO:0016020 | Membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030672 | Synaptic vesicle membrane | IEA | cellular_component |
| GO:0043005 | Neuron projection | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3804499221 | 0.9334793397 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.3917545508 |
| GSE13712_SHEAR | Down | -0.0337358161 |
| GSE13712_STATIC | Down | -0.0907310639 |
| GSE19018 | Up | 0.0847373518 |
| GSE19899_A1 | Up | 0.0885944071 |
| GSE19899_A2 | Up | 0.0870272584 |
| PubMed_21979375_A1 | Down | -0.0679756969 |
| PubMed_21979375_A2 | Up | 0.1948148612 |
| GSE35957 | Up | 0.1946466459 |
| GSE36640 | Up | 0.0793513083 |
| GSE54402 | Up | 0.0473156744 |
| GSE9593 | Down | -0.0301206470 |
| GSE43922 | Up | 0.0139581421 |
| GSE24585 | Down | -0.0826424865 |
| GSE37065 | Down | -0.0065544887 |
| GSE28863_A1 | Down | -0.0062013964 |
| GSE28863_A2 | Up | 0.1571063023 |
| GSE28863_A3 | Up | 0.1674818867 |
| GSE28863_A4 | Up | 0.1002755218 |
| GSE48662 | Up | 0.0551455163 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017484 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036821 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-877-5p | MIMAT0004949 | MIRT037207 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049284 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-25-3p | MIMAT0000081 | MIRT050282 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052365 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
