HCSGD entry for RAB12
1. General information
| Official gene symbol | RAB12 |
|---|---|
| Entrez ID | 201475 |
| Gene full name | RAB12, member RAS oncogene family |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | IEA | cellular_component |
| GO:0005525 | GTP binding | IEA | molecular_function |
| GO:0005764 | Lysosome | ISS | cellular_component |
| GO:0005765 | Lysosomal membrane | IEA | cellular_component |
| GO:0007264 | Small GTPase mediated signal transduction | IEA | biological_process |
| GO:0008333 | Endosome to lysosome transport | ISS | biological_process |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0019003 | GDP binding | IDA | molecular_function |
| GO:0030141 | Secretory granule | IEA | cellular_component |
| GO:0044257 | Cellular protein catabolic process | ISS | biological_process |
| GO:0055038 | Recycling endosome membrane | ISS | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5988602447 | 0.1877693629 | 0.9999902473 | 0.8399991672 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.2341072763 |
| GSE13712_SHEAR | Down | -0.1962231550 |
| GSE13712_STATIC | Down | -0.2948702139 |
| GSE19018 | Up | 0.1992950691 |
| GSE19899_A1 | Down | -0.0713063766 |
| GSE19899_A2 | Down | -0.1312671667 |
| PubMed_21979375_A1 | Up | 0.1512270291 |
| PubMed_21979375_A2 | Down | -0.0469940295 |
| GSE35957 | Down | -0.3367489034 |
| GSE36640 | Up | 0.0386034405 |
| GSE54402 | Down | -0.0503409384 |
| GSE9593 | Down | -0.2716228459 |
| GSE43922 | Down | -0.0779982398 |
| GSE24585 | Down | -0.5600771065 |
| GSE37065 | Up | 0.0049367092 |
| GSE28863_A1 | Up | 0.2269234065 |
| GSE28863_A2 | Up | 0.1565491545 |
| GSE28863_A3 | Down | -0.0676417709 |
| GSE28863_A4 | Up | 0.0637077904 |
| GSE48662 | Up | 0.8439433582 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020325 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-186-5p | MIMAT0000456 | MIRT021142 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025992 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031886 | Proteomics | Functional MTI (Weak) | 18668040 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
