HCSGD entry for JMJD1C
1. General information
| Official gene symbol | JMJD1C |
|---|---|
| Entrez ID | 221037 |
| Gene full name | jumonji domain containing 1C |
| Other gene symbols | RP11-10C13.2 TRIP8 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005622 | Intracellular | NAS | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | TAS | biological_process |
| GO:0007596 | Blood coagulation | TAS | biological_process |
| GO:0016568 | Chromatin modification | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0046966 | Thyroid hormone receptor binding | TAS | molecular_function |
| GO:0051213 | Dioxygenase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0135558147 | 0.9714590745 | 0.2903194467 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1558925765 |
| GSE13712_SHEAR | Up | 0.4738136854 |
| GSE13712_STATIC | Up | 0.2515326507 |
| GSE19018 | Up | 0.1799627928 |
| GSE19899_A1 | Up | 0.4740157255 |
| GSE19899_A2 | Down | -0.0098966519 |
| PubMed_21979375_A1 | Up | 0.9317032383 |
| PubMed_21979375_A2 | Up | 0.5041365438 |
| GSE35957 | Down | -0.0214986850 |
| GSE36640 | Down | -0.1231097200 |
| GSE54402 | Up | 0.3438247748 |
| GSE9593 | Up | 0.0197631863 |
| GSE43922 | Up | 0.5247029197 |
| GSE24585 | Up | 0.2964316962 |
| GSE37065 | Up | 0.4192180507 |
| GSE28863_A1 | Up | 0.3833147047 |
| GSE28863_A2 | Up | 0.6925644756 |
| GSE28863_A3 | Down | -0.1617291800 |
| GSE28863_A4 | Up | 0.0715475592 |
| GSE48662 | Down | -0.7666824267 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-326 | MIMAT0000756 | MIRT043658 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7e-5p | MIMAT0000066 | MIRT051502 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
