HCSGD entry for VPS39
1. General information
| Official gene symbol | VPS39 |
|---|---|
| Entrez ID | 23339 |
| Gene full name | vacuolar protein sorting 39 homolog (S. cerevisiae) |
| Other gene symbols | TLP VAM6 hVam6p |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005083 | Small GTPase regulator activity | IEA | molecular_function |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0485447361 | 0.5291144257 | 0.4864270209 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0455133873 |
| GSE13712_SHEAR | Down | -0.2153334791 |
| GSE13712_STATIC | Down | -0.3291092437 |
| GSE19018 | Up | 0.1858549073 |
| GSE19899_A1 | Down | -0.0891682009 |
| GSE19899_A2 | Down | -0.0393981334 |
| PubMed_21979375_A1 | Down | -0.7556463223 |
| PubMed_21979375_A2 | Up | 1.2973606133 |
| GSE35957 | Up | 0.3809210664 |
| GSE36640 | Up | 0.4008093651 |
| GSE54402 | Up | 0.1361880644 |
| GSE9593 | Up | 0.3526893027 |
| GSE43922 | Down | -0.1645654875 |
| GSE24585 | Up | 0.3308161442 |
| GSE37065 | Up | 0.0846500036 |
| GSE28863_A1 | Up | 0.6276641706 |
| GSE28863_A2 | Up | 0.5892229197 |
| GSE28863_A3 | Down | -0.6636852091 |
| GSE28863_A4 | Down | -0.0271228868 |
| GSE48662 | Up | 0.5729691227 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-let-7b-5p | MIMAT0000063 | MIRT001579 | pSILAC//Proteomics;Other | Functional MTI (Weak) | 18668040 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT017323 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-425-5p | MIMAT0003393 | MIRT039334 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
