HCSGD entry for RNF19A
1. General information
| Official gene symbol | RNF19A |
|---|---|
| Entrez ID | 25897 |
| Gene full name | ring finger protein 19A, E3 ubiquitin protein ligase |
| Other gene symbols | DORFIN RNF19 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000226 | Microtubule cytoskeleton organization | TAS | biological_process |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005813 | Centrosome | TAS | cellular_component |
| GO:0008134 | Transcription factor binding | TAS | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0016874 | Ligase activity | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3083624178 | 0.6119654914 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1297027848 |
| GSE13712_SHEAR | Up | 0.3045371091 |
| GSE13712_STATIC | Up | 0.0519053756 |
| GSE19018 | Down | -0.1712343828 |
| GSE19899_A1 | Up | 0.0838054230 |
| GSE19899_A2 | Up | 0.0097334609 |
| PubMed_21979375_A1 | Up | 0.9131325190 |
| PubMed_21979375_A2 | Up | 0.2357677963 |
| GSE35957 | Down | -0.0380997394 |
| GSE36640 | Up | 0.4685340313 |
| GSE54402 | Down | -0.2442162821 |
| GSE9593 | Up | 0.0670040134 |
| GSE43922 | Up | 0.0009712787 |
| GSE24585 | Up | 0.1179217822 |
| GSE37065 | Up | 0.3007460937 |
| GSE28863_A1 | Up | 0.1640915294 |
| GSE28863_A2 | Up | 0.0278354122 |
| GSE28863_A3 | Down | -0.5332795150 |
| GSE28863_A4 | Up | 0.0632418212 |
| GSE48662 | Down | -0.2969066262 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-29c-3p | MIMAT0000681 | MIRT020414 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-33a-5p | MIMAT0000091 | MIRT028218 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040088 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
