HCSGD entry for GALNT2
1. General information
| Official gene symbol | GALNT2 |
|---|---|
| Entrez ID | 2590 |
| Gene full name | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2 (GalNAc-T2) |
| Other gene symbols | GalNAc-T2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000139 | Golgi membrane | TAS | cellular_component |
| GO:0002378 | Immunoglobulin biosynthetic process | IDA | biological_process |
| GO:0004653 | Polypeptide N-acetylgalactosaminyltransferase activity | IDA | molecular_function |
| GO:0005576 | Extracellular region | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005795 | Golgi stack | IDA | cellular_component |
| GO:0006486 | Protein glycosylation | IEA | biological_process |
| GO:0006493 | Protein O-linked glycosylation | IDA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016266 | O-glycan processing | TAS | biological_process |
| GO:0016757 | Transferase activity, transferring glycosyl groups | IEA | molecular_function |
| GO:0018242 | Protein O-linked glycosylation via serine | IDA | biological_process |
| GO:0018243 | Protein O-linked glycosylation via threonine | IDA | biological_process |
| GO:0030145 | Manganese ion binding | IDA | molecular_function |
| GO:0030173 | Integral component of Golgi membrane | NAS | cellular_component |
| GO:0032580 | Golgi cisterna membrane | IEA | cellular_component |
| GO:0043687 | Post-translational protein modification | TAS | biological_process |
| GO:0044267 | Cellular protein metabolic process | TAS | biological_process |
| GO:0048471 | Perinuclear region of cytoplasm | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6795181528 | 0.0869993731 | 0.9999902473 | 0.5595493281 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.3098338018 |
| GSE13712_SHEAR | Up | 0.1094088282 |
| GSE13712_STATIC | Down | -0.0017406291 |
| GSE19018 | Up | 0.4124149465 |
| GSE19899_A1 | Down | -0.3174667806 |
| GSE19899_A2 | Up | 0.0144454966 |
| PubMed_21979375_A1 | Down | -0.6270785105 |
| PubMed_21979375_A2 | Up | 0.2046706091 |
| GSE35957 | Down | -0.0264528631 |
| GSE36640 | Down | -0.1514345893 |
| GSE54402 | Down | -0.9093428113 |
| GSE9593 | Up | 0.1524061020 |
| GSE43922 | Down | -0.1374831558 |
| GSE24585 | Down | -0.0851467422 |
| GSE37065 | Down | -0.1770116930 |
| GSE28863_A1 | Up | 0.3344763418 |
| GSE28863_A2 | Up | 0.6030067944 |
| GSE28863_A3 | Down | -0.3909015159 |
| GSE28863_A4 | Down | -0.1599341212 |
| GSE48662 | Down | -0.0981893550 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-7-5p | MIMAT0000252 | MIRT025677 | Microarray | Functional MTI (Weak) | 19073608 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027497 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032309 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-1226-3p | MIMAT0005577 | MIRT036420 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-99b-3p | MIMAT0004678 | MIRT038529 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
