HCSGD entry for RIMKLA
1. General information
| Official gene symbol | RIMKLA |
|---|---|
| Entrez ID | 284716 |
| Gene full name | ribosomal modification protein rimK-like family member A |
| Other gene symbols | FAM80A NAAGS NAAGS-II |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005524 | ATP binding | IEA | molecular_function |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006464 | Cellular protein modification process | IEA | biological_process |
| GO:0016881 | Acid-amino acid ligase activity | IEA | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0072590 | N-acetyl-L-aspartate-L-glutamate ligase activity | ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3357210630 | 0.9126240682 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1151346128 |
| GSE13712_SHEAR | Down | -0.0383487707 |
| GSE13712_STATIC | Down | -0.0369800164 |
| GSE19018 | Up | 0.0155208361 |
| GSE19899_A1 | Up | 0.0634787391 |
| GSE19899_A2 | Up | 0.1818627219 |
| PubMed_21979375_A1 | Down | -0.2536217848 |
| PubMed_21979375_A2 | Up | 0.0534592469 |
| GSE35957 | Up | 0.0847637589 |
| GSE36640 | Up | 0.0083255447 |
| GSE54402 | Up | 0.1893592674 |
| GSE9593 | Down | -0.0393474640 |
| GSE43922 | Up | 0.0369255273 |
| GSE24585 | Up | 0.2991006635 |
| GSE37065 | Up | 0.0447366639 |
| GSE28863_A1 | Up | 0.4080964075 |
| GSE28863_A2 | Up | 0.2033594579 |
| GSE28863_A3 | Up | 0.1102315930 |
| GSE28863_A4 | Down | -0.1163429161 |
| GSE48662 | Down | -0.0371173021 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024902 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026388 | Microarray | Functional MTI (Weak) | 19074876 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
