HCSGD entry for PCDHB1

1. General information

Official gene symbolPCDHB1
Entrez ID29930
Gene full nameprotocadherin beta 1
Other gene symbolsPCDH-BETA1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005509Calcium ion bindingIEAmolecular_function
GO:0005886Plasma membraneIEAcellular_component
GO:0007156Homophilic cell adhesionIEAbiological_process
GO:0016021Integral component of membraneIEAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.35946050300.93815810570.99999024731.0000000000

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0297953613
GSE13712_SHEARUp0.1325785544
GSE13712_STATICUp0.1446302009
GSE19018Down-0.0532307303
GSE19899_A1Up0.1378032408
GSE19899_A2Up0.2256843277
PubMed_21979375_A1Up0.0803767444
PubMed_21979375_A2Up0.3269649831
GSE35957Up0.0768160123
GSE36640Up0.1200396054
GSE54402Up0.1955840927
GSE9593Up0.0098572210
GSE43922Up0.0174332408
GSE24585Up0.0355448755
GSE37065Down-0.1789916804
GSE28863_A1Up0.1933138710
GSE28863_A2Up0.0228209341
GSE28863_A3Down-0.0400881335
GSE28863_A4Up0.1118217200
GSE48662Down-0.0172719249

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.