HCSGD entry for HNRNPF
1. General information
| Official gene symbol | HNRNPF |
|---|---|
| Entrez ID | 3185 |
| Gene full name | heterogeneous nuclear ribonucleoprotein F |
| Other gene symbols | HNRPF OK/SW-cl.23 mcs94-1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003723 | RNA binding | TAS | molecular_function |
| GO:0003727 | Single-stranded RNA binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0017025 | TBP-class protein binding | IEA | molecular_function |
| GO:0043484 | Regulation of RNA splicing | IDA IMP | biological_process |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9279984233 | 0.0314991680 | 0.9999902473 | 0.3330202410 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1233022563 |
| GSE13712_SHEAR | Up | 0.2051019287 |
| GSE13712_STATIC | Up | 0.0315915682 |
| GSE19018 | Down | -0.4900894210 |
| GSE19899_A1 | Down | -0.4191919689 |
| GSE19899_A2 | Down | -0.3592437331 |
| PubMed_21979375_A1 | Down | -0.0550250842 |
| PubMed_21979375_A2 | Down | -0.4261271403 |
| GSE35957 | Down | -0.6120571822 |
| GSE36640 | Down | -1.5347365922 |
| GSE54402 | Up | 0.3260137646 |
| GSE9593 | Down | -0.2946950802 |
| GSE43922 | Down | -0.0295309180 |
| GSE24585 | Down | -0.0348750916 |
| GSE37065 | Down | -0.1844318271 |
| GSE28863_A1 | Up | 0.3167271417 |
| GSE28863_A2 | Up | 0.2925940007 |
| GSE28863_A3 | Down | -0.3005372468 |
| GSE28863_A4 | Up | 0.1719065838 |
| GSE48662 | Down | -0.8210749989 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-874-3p | MIMAT0004911 | MIRT037762 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040073 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040847 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-505-3p | MIMAT0002876 | MIRT041015 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-339-5p | MIMAT0000764 | MIRT042766 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-328-3p | MIMAT0000752 | MIRT043767 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-27b-3p | MIMAT0000419 | MIRT046236 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10b-5p | MIMAT0000254 | MIRT047469 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT047662 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049243 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT051089 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052092 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 24478790 | 2; and RASGEF1A, HNRNPF, ANF487, CSTF2T, and PRKG1 at 10q11 |
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