HCSGD entry for NPHP1

1. General information

Official gene symbolNPHP1
Entrez ID4867
Gene full namenephronophthisis 1 (juvenile)
Other gene symbolsJBTS4 NPH1 SLSN1
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0005198Structural molecule activityNASmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005737CytoplasmIEAcellular_component
GO:0005856CytoskeletonIEAcellular_component
GO:0005911Cell-cell junctionIDAcellular_component
GO:0005912Adherens junctionIEAcellular_component
GO:0005923Tight junctionIEAcellular_component
GO:0007165Signal transductionNASbiological_process
GO:0007588ExcretionTASbiological_process
GO:0007632Visual behaviorNASbiological_process
GO:0016020MembraneNAScellular_component
GO:0016337Cell-cell adhesionNASbiological_process
GO:0030030Cell projection organizationISSbiological_process
GO:0030036Actin cytoskeleton organizationNASbiological_process
GO:0031514Motile ciliumIDAcellular_component
GO:0032391Photoreceptor connecting ciliumISScellular_component
GO:0034613Cellular protein localizationIEAbiological_process
GO:0035845Photoreceptor cell outer segment organizationIEAbiological_process
GO:0048515Spermatid differentiationISSbiological_process
GO:0060041Retina development in camera-type eyeISSbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.91531957750.04800213900.99999024730.4100622648

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.4157749279
GSE13712_SHEARDown-0.3306444271
GSE13712_STATICDown-0.3794595192
GSE19018Up0.1414598286
GSE19899_A1Up0.0404655114
GSE19899_A2Down-0.4392155888
PubMed_21979375_A1Down-0.1707258610
PubMed_21979375_A2Down-0.4633931776
GSE35957Down-0.4572265936
GSE36640Down-0.8000157274
GSE54402Down-0.2022585581
GSE9593Down-0.3540982440
GSE43922Down-0.2031667572
GSE24585Up0.8695829517
GSE37065Up0.0697432114
GSE28863_A1Up0.1358977990
GSE28863_A2Up0.1892769919
GSE28863_A3Down-0.2407121202
GSE28863_A4Down-0.1374707544
GSE48662Down-0.0401568344

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase
No target information from mirTarBase
  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.