HCSGD entry for ODF2
1. General information
| Official gene symbol | ODF2 |
|---|---|
| Entrez ID | 4957 |
| Gene full name | outer dense fiber of sperm tails 2 |
| Other gene symbols | CT134 ODF2/1 ODF2/2 ODF84 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000086 | G2/M transition of mitotic cell cycle | TAS | biological_process |
| GO:0000278 | Mitotic cell cycle | TAS | biological_process |
| GO:0000922 | Spindle pole | IEA | cellular_component |
| GO:0001520 | Outer dense fiber | IEA | cellular_component |
| GO:0005198 | Structural molecule activity | TAS | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0005814 | Centriole | IEA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005874 | Microtubule | IEA | cellular_component |
| GO:0005929 | Cilium | IEA | cellular_component |
| GO:0007275 | Multicellular organismal development | IEA | biological_process |
| GO:0007283 | Spermatogenesis | IEA | biological_process |
| GO:0007286 | Spermatid development | IEA | biological_process |
| GO:0030154 | Cell differentiation | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9693779454 | 0.0366802363 | 0.9999902473 | 0.3612717920 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0477981221 |
| GSE13712_SHEAR | Down | -0.1776925872 |
| GSE13712_STATIC | Down | -0.3127510756 |
| GSE19018 | Down | -0.0203600490 |
| GSE19899_A1 | Down | -0.1876826211 |
| GSE19899_A2 | Down | -0.6003509429 |
| PubMed_21979375_A1 | Down | -0.6456963050 |
| PubMed_21979375_A2 | Down | -0.3438859639 |
| GSE35957 | Down | -1.5088038470 |
| GSE36640 | Down | -1.1529220640 |
| GSE54402 | Up | 0.2953222089 |
| GSE9593 | Down | -0.5229846242 |
| GSE43922 | Down | -0.0038257245 |
| GSE24585 | Up | 0.0060498973 |
| GSE37065 | Down | -0.2237927927 |
| GSE28863_A1 | Up | 0.0802626403 |
| GSE28863_A2 | Up | 0.0471153558 |
| GSE28863_A3 | Up | 0.0612230812 |
| GSE28863_A4 | Up | 0.1367386510 |
| GSE48662 | Down | -0.0981131417 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT020042 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-26b-5p | MIMAT0000083 | MIRT030045 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-96-5p | MIMAT0000095 | 1 | hsa-miR-96 | 19363479 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
