HCSGD entry for PCDH8
1. General information
| Official gene symbol | PCDH8 |
|---|---|
| Entrez ID | 5100 |
| Gene full name | protocadherin 8 |
| Other gene symbols | ARCADLIN PAPC |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001756 | Somitogenesis | IEA | biological_process |
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | TAS | cellular_component |
| GO:0005887 | Integral component of plasma membrane | TAS | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0007267 | Cell-cell signaling | TAS | biological_process |
| GO:0007268 | Synaptic transmission | IEA | biological_process |
| GO:0016331 | Morphogenesis of embryonic epithelium | IEA | biological_process |
| GO:0030054 | Cell junction | IEA | cellular_component |
| GO:0030425 | Dendrite | IEA | cellular_component |
| GO:0042734 | Presynaptic membrane | IEA | cellular_component |
| GO:0045211 | Postsynaptic membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.7411133506 | 0.6166164279 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0709088401 |
| GSE13712_SHEAR | Down | -0.2830057605 |
| GSE13712_STATIC | Down | -0.1136752020 |
| GSE19018 | Up | 0.1465702627 |
| GSE19899_A1 | Up | 0.0115200865 |
| GSE19899_A2 | Up | 0.0175119699 |
| PubMed_21979375_A1 | Down | -0.1602656206 |
| PubMed_21979375_A2 | Up | 0.2727668264 |
| GSE35957 | Up | 0.0396830068 |
| GSE36640 | Down | -0.0923482774 |
| GSE54402 | Down | -0.0959335215 |
| GSE9593 | Down | -0.2029333372 |
| GSE43922 | Up | 0.0262873811 |
| GSE24585 | Up | 0.3412060815 |
| GSE37065 | Down | -0.0067410118 |
| GSE28863_A1 | Down | -0.0799233827 |
| GSE28863_A2 | Down | -0.1347951850 |
| GSE28863_A3 | Up | 0.2126318690 |
| GSE28863_A4 | Up | 0.0315316067 |
| GSE48662 | Down | -0.0235710000 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-200a-3p | MIMAT0000682 | MIRT000773 | Microarray//Northern blot | Functional MTI (Weak) | 16331254 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
