HCSGD entry for YBX2
1. General information
| Official gene symbol | YBX2 |
|---|---|
| Entrez ID | 51087 |
| Gene full name | Y box binding protein 2 |
| Other gene symbols | CONTRIN CSDA3 DBPC MSY2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003677 | DNA binding | IEA | molecular_function |
| GO:0003682 | Chromatin binding | IEA | molecular_function |
| GO:0003730 | MRNA 3'-UTR binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005844 | Polysome | IEA | cellular_component |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0007283 | Spermatogenesis | TAS | biological_process |
| GO:0007286 | Spermatid development | IEA | biological_process |
| GO:0008289 | Lipid binding | IEA | molecular_function |
| GO:0009386 | Translational attenuation | TAS | biological_process |
| GO:0017148 | Negative regulation of translation | IEA | biological_process |
| GO:0043021 | Ribonucleoprotein complex binding | IEA | molecular_function |
| GO:0045182 | Translation regulator activity | IEA | molecular_function |
| GO:0048255 | MRNA stabilization | IEA | biological_process |
| GO:0048599 | Oocyte development | IEA | biological_process |
| GO:0051100 | Negative regulation of binding | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2771672277 | 0.7308744767 | 0.9740395327 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0871888525 |
| GSE13712_SHEAR | Down | -0.2071039508 |
| GSE13712_STATIC | Down | -0.1246910016 |
| GSE19018 | Up | 0.2240527630 |
| GSE19899_A1 | Up | 0.0466497733 |
| GSE19899_A2 | Up | 0.1433838090 |
| PubMed_21979375_A1 | Up | 0.0794618275 |
| PubMed_21979375_A2 | Up | 0.1489565552 |
| GSE35957 | Up | 0.2921348285 |
| GSE36640 | Down | -0.0488406615 |
| GSE54402 | Up | 0.0242781097 |
| GSE9593 | Up | 0.0271185426 |
| GSE43922 | Up | 0.2199194980 |
| GSE24585 | Up | 0.2418725077 |
| GSE37065 | Down | -0.0488364664 |
| GSE28863_A1 | Down | -0.3562775214 |
| GSE28863_A2 | Down | -0.2282223187 |
| GSE28863_A3 | Up | 0.4608127272 |
| GSE28863_A4 | Up | 0.2065752495 |
| GSE48662 | Down | -0.1357420267 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT019164 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
