HCSGD entry for IFT52
1. General information
| Official gene symbol | IFT52 |
|---|---|
| Entrez ID | 51098 |
| Gene full name | intraflagellar transport 52 homolog (Chlamydomonas) |
| Other gene symbols | C20orf9 CGI-53 NGD2 NGD5 dJ1028D15.1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001841 | Neural tube formation | IEA | biological_process |
| GO:0001947 | Heart looping | IEA | biological_process |
| GO:0007224 | Smoothened signaling pathway | IEA | biological_process |
| GO:0008022 | Protein C-terminus binding | ISS | molecular_function |
| GO:0009953 | Dorsal/ventral pattern formation | IEA | biological_process |
| GO:0030992 | Intraciliary transport particle B | ISS | cellular_component |
| GO:0031514 | Motile cilium | ISS | cellular_component |
| GO:0032391 | Photoreceptor connecting cilium | IEA | cellular_component |
| GO:0042733 | Embryonic digit morphogenesis | IEA | biological_process |
| GO:0044292 | Dendrite terminus | IEA | cellular_component |
| GO:0045862 | Positive regulation of proteolysis | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9537678660 | 0.0419634512 | 0.9999902473 | 0.3852596234 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0552367454 |
| GSE13712_SHEAR | Down | -0.5672384530 |
| GSE13712_STATIC | Down | -0.3008800290 |
| GSE19018 | Up | 0.1965622608 |
| GSE19899_A1 | Down | -0.3813886754 |
| GSE19899_A2 | Down | -0.4485235633 |
| PubMed_21979375_A1 | Down | -0.7115990455 |
| PubMed_21979375_A2 | Down | -0.6369625291 |
| GSE35957 | Down | -0.0792292137 |
| GSE36640 | Down | -0.1181359383 |
| GSE54402 | Down | -0.1470714130 |
| GSE9593 | Up | 0.1420229590 |
| GSE43922 | Down | -0.5744062774 |
| GSE24585 | Up | 0.2013145207 |
| GSE37065 | Down | -0.2438578771 |
| GSE28863_A1 | Up | 0.1734697608 |
| GSE28863_A2 | Down | -0.0132617281 |
| GSE28863_A3 | Down | -0.6537741779 |
| GSE28863_A4 | Up | 0.1146986887 |
| GSE48662 | Down | -0.0176534485 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | MIRT003771 | Microarray | Functional MTI (Weak) | 15685193 |
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- mirRecord
MicroRNA name | mirBase ID | Target site number | MiRNA mature ID | Test method inter | MiRNA regulation site | Reporter target site | Pubmed ID |
|---|---|---|---|---|---|---|---|
| hsa-miR-1 | MIMAT0000416 | NA | hsa-miR-1 | 15685193 |
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6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
