HCSGD entry for ERGIC2
1. General information
| Official gene symbol | ERGIC2 |
|---|---|
| Entrez ID | 51290 |
| Gene full name | ERGIC and golgi 2 |
| Other gene symbols | Erv41 PTX1 cd002 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005789 | Endoplasmic reticulum membrane | IEA | cellular_component |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0033116 | Endoplasmic reticulum-Golgi intermediate compartment membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.3332473690 | 0.4815159112 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2192307106 |
| GSE13712_SHEAR | Up | 0.0555361392 |
| GSE13712_STATIC | Up | 0.3554716920 |
| GSE19018 | Down | -0.1196749709 |
| GSE19899_A1 | Up | 0.1318983421 |
| GSE19899_A2 | Down | -0.3753132345 |
| PubMed_21979375_A1 | Up | 0.0288153777 |
| PubMed_21979375_A2 | Up | 0.1949332344 |
| GSE35957 | Up | 0.2258947371 |
| GSE36640 | Up | 0.2809748967 |
| GSE54402 | Down | -0.1515556105 |
| GSE9593 | Up | 0.0793777880 |
| GSE43922 | Up | 0.0731160113 |
| GSE24585 | Down | -0.1663714632 |
| GSE37065 | Up | 0.1397744553 |
| GSE28863_A1 | Down | -0.0954384776 |
| GSE28863_A2 | Up | 0.1420004131 |
| GSE28863_A3 | Down | -0.8481429289 |
| GSE28863_A4 | Up | 0.2781619719 |
| GSE48662 | Down | -0.4993494738 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-98-5p | MIMAT0000096 | MIRT027760 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-32-5p | MIMAT0000090 | MIRT028384 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032433 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-671-3p | MIMAT0004819 | MIRT037771 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049453 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 16989575 | Recently, it was found to be a homolog of the yeast Erv41p, an endoplasmic reticulum (ER) resident protein involved in protein trafficking between ER and Golgi, and was renamed as ERGIC2 |
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