HCSGD entry for SNX9
1. General information
| Official gene symbol | SNX9 |
|---|---|
| Entrez ID | 51429 |
| Gene full name | sorting nexin 9 |
| Other gene symbols | MST155 MSTP155 SDP1 SH3PX1 SH3PXD3A WISP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000281 | Mitotic cytokinesis | IMP | biological_process |
| GO:0001726 | Ruffle | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005545 | 1-phosphatidylinositol binding | IDA | molecular_function |
| GO:0005794 | Golgi apparatus | IEA | cellular_component |
| GO:0005802 | Trans-Golgi network | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IMP | biological_process |
| GO:0006897 | Endocytosis | IMP | biological_process |
| GO:0006898 | Receptor-mediated endocytosis | IMP | biological_process |
| GO:0007067 | Mitosis | IEA | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0016023 | Cytoplasmic membrane-bounded vesicle | IDA | cellular_component |
| GO:0016197 | Endosomal transport | IMP | biological_process |
| GO:0030136 | Clathrin-coated vesicle | IDA | cellular_component |
| GO:0030659 | Cytoplasmic vesicle membrane | IDA | cellular_component |
| GO:0031234 | Extrinsic component of cytoplasmic side of plasma membrane | IDA | cellular_component |
| GO:0031625 | Ubiquitin protein ligase binding | IPI | molecular_function |
| GO:0032461 | Positive regulation of protein oligomerization | IDA | biological_process |
| GO:0036089 | Cleavage furrow formation | IMP | biological_process |
| GO:0042803 | Protein homodimerization activity | IPI | molecular_function |
| GO:0043547 | Positive regulation of GTPase activity | IDA | biological_process |
| GO:0060988 | Lipid tube assembly | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0036901030 | 0.8949930398 | 0.1631743289 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6498858176 |
| GSE13712_SHEAR | Down | -0.4069406740 |
| GSE13712_STATIC | Down | -0.4624833902 |
| GSE19018 | Down | -0.4391036897 |
| GSE19899_A1 | Up | 1.8458705688 |
| GSE19899_A2 | Up | 0.6904723998 |
| PubMed_21979375_A1 | Up | 0.8182317672 |
| PubMed_21979375_A2 | Up | 1.1154145989 |
| GSE35957 | Up | 0.1624660864 |
| GSE36640 | Up | 0.2418117200 |
| GSE54402 | Up | 0.5655392857 |
| GSE9593 | Up | 0.5987096040 |
| GSE43922 | Up | 0.6481112579 |
| GSE24585 | Up | 0.1359262792 |
| GSE37065 | Up | 0.3931340027 |
| GSE28863_A1 | Up | 0.2200210513 |
| GSE28863_A2 | Up | 0.8085290813 |
| GSE28863_A3 | Down | -0.1489294770 |
| GSE28863_A4 | Down | -0.4034211418 |
| GSE48662 | Up | 0.3650706804 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-193b-3p | MIMAT0002819 | MIRT016587 | Microarray | Functional MTI (Weak) | 20304954 |
| hsa-miR-335-5p | MIMAT0000765 | MIRT018610 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-124-3p | MIMAT0000422 | MIRT022921 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-196b-5p | MIMAT0001080 | MIRT042698 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049111 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
