HCSGD entry for NOP58
1. General information
| Official gene symbol | NOP58 |
|---|---|
| Entrez ID | 51602 |
| Gene full name | NOP58 ribonucleoprotein |
| Other gene symbols | NOP5 NOP5/NOP58 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA TAS | cellular_component |
| GO:0005732 | Small nucleolar ribonucleoprotein complex | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0006364 | RRNA processing | TAS | biological_process |
| GO:0006608 | SnRNP protein import into nucleus | ISS | biological_process |
| GO:0015030 | Cajal body | IDA | cellular_component |
| GO:0016049 | Cell growth | TAS | biological_process |
| GO:0030515 | SnoRNA binding | IDA | molecular_function |
| GO:0031428 | Box C/D snoRNP complex | NAS | cellular_component |
| GO:0070761 | Pre-snoRNP complex | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5944319821 | 0.0570597280 | 0.9999902473 | 0.4487209740 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1034807636 |
| GSE13712_SHEAR | Up | 0.3151861674 |
| GSE13712_STATIC | Up | 0.1880083266 |
| GSE19018 | Down | -1.2475792634 |
| GSE19899_A1 | Down | -0.0117550347 |
| GSE19899_A2 | Up | 0.4664046499 |
| PubMed_21979375_A1 | Up | 0.3467366495 |
| PubMed_21979375_A2 | Up | 0.1517480175 |
| GSE35957 | Down | -0.9769704161 |
| GSE36640 | Down | -0.7903430759 |
| GSE54402 | Up | 0.0785061340 |
| GSE9593 | Down | -0.6336437551 |
| GSE43922 | Down | -0.0204594306 |
| GSE24585 | Down | -0.3020302465 |
| GSE37065 | Down | -0.1345739101 |
| GSE28863_A1 | Up | 0.1557887785 |
| GSE28863_A2 | Up | 0.5486278031 |
| GSE28863_A3 | Down | -0.3829599758 |
| GSE28863_A4 | Up | 0.0314867707 |
| GSE48662 | Down | -0.5723008392 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-221-3p | MIMAT0000278 | MIRT046864 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
