HCSGD entry for ZRANB1
1. General information
| Official gene symbol | ZRANB1 |
|---|---|
| Entrez ID | 54764 |
| Gene full name | zinc finger, RAN-binding domain containing 1 |
| Other gene symbols | TRABID |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004221 | Ubiquitin thiolesterase activity | IMP | molecular_function |
| GO:0004843 | Ubiquitin-specific protease activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0007010 | Cytoskeleton organization | IMP | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016055 | Wnt signaling pathway | IEA | biological_process |
| GO:0016477 | Cell migration | IMP | biological_process |
| GO:0022604 | Regulation of cell morphogenesis | IMP | biological_process |
| GO:0030177 | Positive regulation of Wnt signaling pathway | IMP | biological_process |
| GO:0035523 | Protein K29-linked deubiquitination | IDA | biological_process |
| GO:0070530 | K63-linked polyubiquitin binding | IDA | molecular_function |
| GO:0070536 | Protein K63-linked deubiquitination | IDA IMP | biological_process |
| GO:0071947 | Protein deubiquitination involved in ubiquitin-dependent protein catabolic process | IMP | biological_process |
| GO:1990168 | Protein K33-linked deubiquitination | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4019882299 | 0.3211114623 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1439720052 |
| GSE13712_SHEAR | Down | -0.0060466356 |
| GSE13712_STATIC | Up | 0.0935029531 |
| GSE19018 | Up | 0.6250279786 |
| GSE19899_A1 | Down | -0.3866969257 |
| GSE19899_A2 | Down | -0.1829934737 |
| PubMed_21979375_A1 | Down | -0.1940941393 |
| PubMed_21979375_A2 | Up | 0.0066361885 |
| GSE35957 | Up | 0.2717894211 |
| GSE36640 | Down | -0.1835495846 |
| GSE54402 | Down | -0.4977906258 |
| GSE9593 | Up | 0.2717660510 |
| GSE43922 | Down | -0.2248991114 |
| GSE24585 | Up | 0.2179833378 |
| GSE37065 | Down | -0.0282388614 |
| GSE28863_A1 | Up | 0.3324882339 |
| GSE28863_A2 | Up | 0.3509971186 |
| GSE28863_A3 | Down | -0.3271522087 |
| GSE28863_A4 | Up | 0.0031411939 |
| GSE48662 | Up | 0.0606069917 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027006 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-21-5p | MIMAT0000076 | MIRT030762 | Microarray | Functional MTI (Weak) | 18591254 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031505 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
