HCSGD entry for GPATCH4
1. General information
| Official gene symbol | GPATCH4 |
|---|---|
| Entrez ID | 54865 |
| Gene full name | G patch domain containing 4 |
| Other gene symbols | GPATC4 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.4089495878 | 0.2534471905 | 0.9999902473 | 0.9663454282 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1561378509 |
| GSE13712_SHEAR | Up | 0.1862007811 |
| GSE13712_STATIC | Up | 0.0618412422 |
| GSE19018 | Down | -1.0433371412 |
| GSE19899_A1 | Up | 0.0579442939 |
| GSE19899_A2 | Up | 0.1794185640 |
| PubMed_21979375_A1 | Up | 0.9423891707 |
| PubMed_21979375_A2 | Up | 0.0270107600 |
| GSE35957 | Down | -0.1512025597 |
| GSE36640 | Down | -0.4451130297 |
| GSE54402 | Up | 0.4074817971 |
| GSE9593 | Down | -0.1994939994 |
| GSE43922 | Up | 0.1537595528 |
| GSE24585 | Down | -0.5645897052 |
| GSE37065 | Down | -0.0252910918 |
| GSE28863_A1 | Down | -0.1682949568 |
| GSE28863_A2 | Up | 0.1188920190 |
| GSE28863_A3 | Up | 0.2442875542 |
| GSE28863_A4 | Down | -0.0488291117 |
| GSE48662 | Down | -0.3449349746 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022174 | Proteomics;Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031426 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT032224 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-484 | MIMAT0002174 | MIRT041996 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
