HCSGD entry for ATG16L1
1. General information
| Official gene symbol | ATG16L1 |
|---|---|
| Entrez ID | 55054 |
| Gene full name | autophagy related 16-like 1 (S. cerevisiae) |
| Other gene symbols | APG16L ATG16A ATG16L IBD10 WDR30 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000045 | Autophagic vacuole assembly | NAS | biological_process |
| GO:0000421 | Autophagic vacuole membrane | IEA | cellular_component |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005776 | Autophagic vacuole | ISS | cellular_component |
| GO:0005930 | Axoneme | ISS | cellular_component |
| GO:0015031 | Protein transport | IEA | biological_process |
| GO:0034045 | Pre-autophagosomal structure membrane | IEA | cellular_component |
| GO:0042802 | Identical protein binding | IPI | molecular_function |
| GO:0051260 | Protein homooligomerization | NAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6661498803 | 0.3659649709 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0155867008 |
| GSE13712_SHEAR | Down | -0.0433275126 |
| GSE13712_STATIC | Up | 0.0145996324 |
| GSE19018 | Down | -0.3643983968 |
| GSE19899_A1 | Down | -0.0536866688 |
| GSE19899_A2 | Up | 0.1355794655 |
| PubMed_21979375_A1 | Up | 0.4066551451 |
| PubMed_21979375_A2 | Up | 0.1973227520 |
| GSE35957 | Down | -0.2373951037 |
| GSE36640 | Up | 0.0459256367 |
| GSE54402 | Up | 0.1039366451 |
| GSE9593 | Up | 0.0355748221 |
| GSE43922 | Up | 0.4803626132 |
| GSE24585 | Down | -0.0597512127 |
| GSE37065 | Down | -0.1051226775 |
| GSE28863_A1 | Down | -0.0925773109 |
| GSE28863_A2 | Up | 0.2923488809 |
| GSE28863_A3 | Down | -0.8643540488 |
| GSE28863_A4 | Down | -0.0992684950 |
| GSE48662 | Up | 0.0429877033 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-188-3p | MIMAT0004613 | MIRT038607 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-196a-5p | MIMAT0000226 | MIRT048211 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049399 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
