HCSGD entry for KDM4D
1. General information
| Official gene symbol | KDM4D |
|---|---|
| Entrez ID | 55693 |
| Gene full name | lysine (K)-specific demethylase 4D |
| Other gene symbols | JMJD2D |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0033169 | Histone H3-K9 demethylation | IEA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0051213 | Dioxygenase activity | IEA | molecular_function |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8978867026 | 0.1657738650 | 0.9999902473 | 0.7880321293 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0423849675 |
| GSE13712_SHEAR | Down | -0.1267363157 |
| GSE13712_STATIC | Down | -0.0712099529 |
| GSE19018 | Up | 0.1168884842 |
| GSE19899_A1 | Up | 0.0217528650 |
| GSE19899_A2 | Down | -0.4148843357 |
| PubMed_21979375_A1 | Down | -0.1779624895 |
| PubMed_21979375_A2 | Down | -0.2696719361 |
| GSE35957 | Down | -0.1570365293 |
| GSE36640 | Down | -0.4396829358 |
| GSE54402 | Down | -0.2856759836 |
| GSE9593 | Up | 0.0682568189 |
| GSE43922 | Down | -0.1985169280 |
| GSE24585 | Up | 0.4119859382 |
| GSE37065 | Up | 0.0949345553 |
| GSE28863_A1 | Up | 0.1760161585 |
| GSE28863_A2 | Up | 0.2573700940 |
| GSE28863_A3 | Down | -0.4975703881 |
| GSE28863_A4 | Down | -0.0351884677 |
| GSE48662 | Down | -0.3415431836 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-215-5p | MIMAT0000272 | MIRT024726 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-192-5p | MIMAT0000222 | MIRT026730 | Microarray | Functional MTI (Weak) | 19074876 |
| hsa-miR-20a-5p | MIMAT0000075 | MIRT050602 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
