HCSGD entry for VPS11
1. General information
| Official gene symbol | VPS11 |
|---|---|
| Entrez ID | 55823 |
| Gene full name | vacuolar protein sorting 11 homolog (S. cerevisiae) |
| Other gene symbols | END1 PEP5 RNF108 hVPS11 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0005768 | Endosome | IDA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0030139 | Endocytic vesicle | IDA | cellular_component |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0708471221 | 0.4864304852 | 0.5682966504 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.4843638020 |
| GSE13712_SHEAR | Down | -0.0540103318 |
| GSE13712_STATIC | Down | -0.2641472622 |
| GSE19018 | Up | 0.0835012770 |
| GSE19899_A1 | Down | -0.1280687476 |
| GSE19899_A2 | Up | 0.2041905437 |
| PubMed_21979375_A1 | Up | 1.0187974383 |
| PubMed_21979375_A2 | Up | 0.6235277030 |
| GSE35957 | Up | 0.0994821703 |
| GSE36640 | Up | 0.2819159807 |
| GSE54402 | Up | 0.0932746892 |
| GSE9593 | Up | 0.3535881592 |
| GSE43922 | Down | -0.2769941809 |
| GSE24585 | Up | 0.6850390361 |
| GSE37065 | Up | 0.1249329478 |
| GSE28863_A1 | Up | 0.1029849296 |
| GSE28863_A2 | Up | 0.0921602293 |
| GSE28863_A3 | Down | -1.1098816694 |
| GSE28863_A4 | Down | -0.2078754415 |
| GSE48662 | Up | 0.3980869843 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-331-3p | MIMAT0000760 | MIRT043320 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
