HCSGD entry for RGMA
1. General information
| Official gene symbol | RGMA |
|---|---|
| Entrez ID | 56963 |
| Gene full name | RGM domain family, member A |
| Other gene symbols | RGM |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0001843 | Neural tube closure | IEA | biological_process |
| GO:0005783 | Endoplasmic reticulum | IDA | cellular_component |
| GO:0005886 | Plasma membrane | IEA | cellular_component |
| GO:0007411 | Axon guidance | TAS | biological_process |
| GO:0009986 | Cell surface | IEA | cellular_component |
| GO:0015026 | Coreceptor activity | IEA | molecular_function |
| GO:0030509 | BMP signaling pathway | IEA | biological_process |
| GO:0030510 | Regulation of BMP signaling pathway | IEA | biological_process |
| GO:0031225 | Anchored component of membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5173116903 | 0.7277742069 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0858143591 |
| GSE13712_SHEAR | Up | 0.0169094292 |
| GSE13712_STATIC | Up | 0.0725692996 |
| GSE19018 | Down | -0.0522255139 |
| GSE19899_A1 | Down | -0.1221025541 |
| GSE19899_A2 | Up | 0.0931934098 |
| PubMed_21979375_A1 | Up | 0.2069421373 |
| PubMed_21979375_A2 | Down | -0.1657702558 |
| GSE35957 | Down | -0.0615113173 |
| GSE36640 | Down | -0.0876848820 |
| GSE54402 | Up | 0.0004938055 |
| GSE9593 | Down | -0.0789541586 |
| GSE43922 | Up | 0.3055354869 |
| GSE24585 | Up | 0.0946303398 |
| GSE37065 | Down | -0.2782443968 |
| GSE28863_A1 | Up | 0.1914493818 |
| GSE28863_A2 | Up | 0.0380162644 |
| GSE28863_A3 | Up | 0.3028973898 |
| GSE28863_A4 | Up | 0.1985064340 |
| GSE48662 | Down | -0.1617009095 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-148b-3p | MIMAT0000759 | MIRT019379 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT040467 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
