HCSGD entry for VPS18
1. General information
| Official gene symbol | VPS18 |
|---|---|
| Entrez ID | 57617 |
| Gene full name | vacuolar protein sorting 18 homolog (S. cerevisiae) |
| Other gene symbols | PEP3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005765 | Lysosomal membrane | IDA | cellular_component |
| GO:0005769 | Early endosome | IEA | cellular_component |
| GO:0005884 | Actin filament | IEA | cellular_component |
| GO:0006886 | Intracellular protein transport | IEA | biological_process |
| GO:0007032 | Endosome organization | IDA | biological_process |
| GO:0007040 | Lysosome organization | IDA | biological_process |
| GO:0016192 | Vesicle-mediated transport | IEA | biological_process |
| GO:0030897 | HOPS complex | IDA | cellular_component |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0407479541 | 0.9241188101 | 0.4523692081 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1420128137 |
| GSE13712_SHEAR | Up | 0.0463462293 |
| GSE13712_STATIC | Up | 0.3835925987 |
| GSE19018 | Down | -0.0138971133 |
| GSE19899_A1 | Up | 0.1330019467 |
| GSE19899_A2 | Up | 0.6517509386 |
| PubMed_21979375_A1 | Down | -0.0638627792 |
| PubMed_21979375_A2 | Up | 0.7442498403 |
| GSE35957 | Down | -0.0216198521 |
| GSE36640 | Up | 0.1411073425 |
| GSE54402 | Up | 0.4308043162 |
| GSE9593 | Up | 0.4301936353 |
| GSE43922 | Up | 0.6048573895 |
| GSE24585 | Down | -0.1408956673 |
| GSE37065 | Down | -0.0015708952 |
| GSE28863_A1 | Up | 0.0230642313 |
| GSE28863_A2 | Up | 0.4883162850 |
| GSE28863_A3 | Down | -0.4638306650 |
| GSE28863_A4 | Down | -0.0637656891 |
| GSE48662 | Up | 0.0389694242 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-155-5p | MIMAT0000646 | MIRT021057 | Reporter assay | Functional MTI | 20584899 |
| hsa-miR-615-3p | MIMAT0003283 | MIRT039983 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-324-3p | MIMAT0000762 | MIRT042991 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
