HCSGD entry for SCAF1
1. General information
| Official gene symbol | SCAF1 |
|---|---|
| Entrez ID | 58506 |
| Gene full name | SR-related CTD-associated factor 1 |
| Other gene symbols | SRA1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | IEA | biological_process |
| GO:0006397 | MRNA processing | IEA | biological_process |
| GO:0008380 | RNA splicing | IEA | biological_process |
| GO:0019904 | Protein domain specific binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1633797348 | 0.7150945595 | 0.8005059568 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0554968536 |
| GSE13712_SHEAR | Up | 0.1004330270 |
| GSE13712_STATIC | Down | -0.0987409728 |
| GSE19018 | Up | 0.1230256687 |
| GSE19899_A1 | Down | -0.1859514842 |
| GSE19899_A2 | Up | 0.3094890812 |
| PubMed_21979375_A1 | Down | -0.0925081404 |
| PubMed_21979375_A2 | Up | 0.9501923844 |
| GSE35957 | Down | -0.0082883826 |
| GSE36640 | Down | -0.0472250487 |
| GSE54402 | Up | 0.2005723947 |
| GSE9593 | Up | 0.0694503633 |
| GSE43922 | Up | 0.2446281727 |
| GSE24585 | Down | -0.0026173519 |
| GSE37065 | Down | -0.1331467433 |
| GSE28863_A1 | Down | -0.0919805176 |
| GSE28863_A2 | Down | -0.0831275414 |
| GSE28863_A3 | Up | 0.2905566718 |
| GSE28863_A4 | Up | 0.0009198751 |
| GSE48662 | Up | 0.3253260561 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-103a-3p | MIMAT0000101 | MIRT026982 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-30a-5p | MIMAT0000087 | MIRT028412 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-92b-3p | MIMAT0003218 | MIRT040703 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-320a | MIMAT0000510 | MIRT044596 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
