HCSGD entry for SNRPA1
1. General information
| Official gene symbol | SNRPA1 |
|---|---|
| Entrez ID | 6627 |
| Gene full name | small nuclear ribonucleoprotein polypeptide A' |
| Other gene symbols | Lea1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000398 | MRNA splicing, via spliceosome | IC TAS | biological_process |
| GO:0003723 | RNA binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005681 | Spliceosomal complex | IDA | cellular_component |
| GO:0005686 | U2 snRNP | TAS | cellular_component |
| GO:0008380 | RNA splicing | TAS | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0019013 | Viral nucleocapsid | IEA | cellular_component |
| GO:0030529 | Ribonucleoprotein complex | IEA | cellular_component |
| GO:0030532 | Small nuclear ribonucleoprotein complex | TAS | cellular_component |
| GO:0071013 | Catalytic step 2 spliceosome | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1684730139 | 0.3687616010 | 0.8090845060 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1956863006 |
| GSE13712_SHEAR | Up | 0.7416971805 |
| GSE13712_STATIC | Up | 0.2830539489 |
| GSE19018 | Up | 0.0043710144 |
| GSE19899_A1 | Up | 0.3820858154 |
| GSE19899_A2 | Down | -0.0555301135 |
| PubMed_21979375_A1 | Down | -0.0242576491 |
| PubMed_21979375_A2 | Down | -0.1395366825 |
| GSE35957 | Down | -0.5311184812 |
| GSE36640 | Down | -0.6122981021 |
| GSE54402 | Up | 0.3825803066 |
| GSE9593 | Down | -0.4525252826 |
| GSE43922 | Up | 0.0124774908 |
| GSE24585 | Down | -0.3987366697 |
| GSE37065 | Up | 0.3323271681 |
| GSE28863_A1 | Up | 0.3156290227 |
| GSE28863_A2 | Up | 0.3962806827 |
| GSE28863_A3 | Down | -0.0138845717 |
| GSE28863_A4 | Up | 0.0952742132 |
| GSE48662 | Down | -0.7578754166 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019817 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027521 | Microarray | Functional MTI (Weak) | 19088304 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031694 | Proteomics | Functional MTI (Weak) | 18668040 |
| hsa-miR-182-5p | MIMAT0000259 | MIRT047183 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-34a-5p | MIMAT0000255 | MIRT047363 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
