HCSGD entry for SNRPE

1. General information

Official gene symbolSNRPE
Entrez ID6635
Gene full namesmall nuclear ribonucleoprotein polypeptide E
Other gene symbolsB-raf HYPT11 SME Sm-E
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in Literature mining network.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0000245Spliceosomal complex assemblyNASbiological_process
GO:0000387Spliceosomal snRNP assemblyIDA TASbiological_process
GO:0000398MRNA splicing, via spliceosomeIC IEA TASbiological_process
GO:0003723RNA bindingIEAmolecular_function
GO:0005515Protein bindingIPImolecular_function
GO:0005634NucleusIDAcellular_component
GO:0005654NucleoplasmTAScellular_component
GO:0005681Spliceosomal complexIEA NAScellular_component
GO:0005683U7 snRNPIDAcellular_component
GO:0005685U1 snRNPIDAcellular_component
GO:0005687U4 snRNPIDAcellular_component
GO:0005689U12-type spliceosomal complexIDAcellular_component
GO:0005829CytosolIDA TAScellular_component
GO:0006366Transcription from RNA polymerase II promoterTASbiological_process
GO:0006369Termination of RNA polymerase II transcriptionTASbiological_process
GO:0008334Histone mRNA metabolic processTASbiological_process
GO:0008380RNA splicingTASbiological_process
GO:0010467Gene expressionTASbiological_process
GO:0016070RNA metabolic processTASbiological_process
GO:0030532Small nuclear ribonucleoprotein complexNAScellular_component
GO:0031124MRNA 3'-end processingTASbiological_process
GO:0034660NcRNA metabolic processTASbiological_process
GO:0034709MethylosomeIDAcellular_component
GO:0034715PICln-Sm protein complexIDAcellular_component
GO:0034719SMN-Sm protein complexIDAcellular_component
GO:0042633Hair cycleIMPbiological_process
GO:0071013Catalytic step 2 spliceosomeIDAcellular_component
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.94289238630.07433051940.99999024730.5138391019

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-0.0365372775
GSE13712_SHEARDown-0.1738470295
GSE13712_STATICDown-0.0204298839
GSE19018Down-0.1320101437
GSE19899_A1Up0.0453998601
GSE19899_A2Down-0.2976051355
PubMed_21979375_A1Down-0.1312845072
PubMed_21979375_A2Down-0.4845338104
GSE35957Down-0.1867015696
GSE36640Down-0.7328215353
GSE54402Down-0.1276319636
GSE9593Down-0.4394078779
GSE43922Down-0.0232057018
GSE24585Down-0.5148202789
GSE37065Down-0.1020852602
GSE28863_A1Up0.1081079021
GSE28863_A2Up0.0625293055
GSE28863_A3Up0.2513489013
GSE28863_A4Up0.0114889956
GSE48662Up0.1306497242

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

  • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-92a-3pMIMAT0000092MIRT049628CLASHFunctional MTI (Weak)23622248
hsa-let-7b-5pMIMAT0000063MIRT051965CLASHFunctional MTI (Weak)23622248
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  • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.