HCSGD entry for TNXB
1. General information
| Official gene symbol | TNXB |
|---|---|
| Entrez ID | 7148 |
| Gene full name | tenascin XB |
| Other gene symbols | EDS3 HXBL TENX TN-X TNX TNXB1 TNXB2 TNXBS XB XBS |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005178 | Integrin binding | ISS | molecular_function |
| GO:0005578 | Proteinaceous extracellular matrix | NAS | cellular_component |
| GO:0005583 | Fibrillar collagen | IDA | cellular_component |
| GO:0005615 | Extracellular space | IDA | cellular_component |
| GO:0005622 | Intracellular | IDA | cellular_component |
| GO:0007155 | Cell adhesion | ISS | biological_process |
| GO:0008201 | Heparin binding | ISS | molecular_function |
| GO:0030036 | Actin cytoskeleton organization | ISS | biological_process |
| GO:0031012 | Extracellular matrix | IDA ISS | cellular_component |
| GO:0032963 | Collagen metabolic process | IMP | biological_process |
| GO:0048251 | Elastic fiber assembly | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1624735762 | 0.9157129820 | 0.7974773304 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1070475412 |
| GSE13712_SHEAR | Down | -0.1661324528 |
| GSE13712_STATIC | Down | -0.0543422835 |
| GSE19018 | Up | 0.0283170572 |
| GSE19899_A1 | Down | -0.0377305718 |
| GSE19899_A2 | Up | 0.0413012995 |
| PubMed_21979375_A1 | Down | -0.1819848635 |
| PubMed_21979375_A2 | Down | -0.0971702346 |
| GSE35957 | Up | 0.0644507828 |
| GSE36640 | Up | 0.0290852591 |
| GSE54402 | Up | 0.0105350541 |
| GSE9593 | Up | 0.0765980396 |
| GSE43922 | - | - |
| GSE24585 | - | - |
| GSE37065 | - | - |
| GSE28863_A1 | Up | 1.3300175288 |
| GSE28863_A2 | Up | 0.5022748689 |
| GSE28863_A3 | Up | 0.1461569297 |
| GSE28863_A4 | Up | 0.1390046662 |
| GSE48662 | Up | 0.7073583573 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-1301-3p | MIMAT0005797 | MIRT036021 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
