HCSGD entry for TRIM56
1. General information
| Official gene symbol | TRIM56 |
|---|---|
| Entrez ID | 81844 |
| Gene full name | tripartite motif containing 56 |
| Other gene symbols | RNF109 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004842 | Ubiquitin-protein ligase activity | ISS TAS | molecular_function |
| GO:0005622 | Intracellular | IEA | cellular_component |
| GO:0005737 | Cytoplasm | ISS | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0032479 | Regulation of type I interferon production | TAS | biological_process |
| GO:0032481 | Positive regulation of type I interferon production | TAS | biological_process |
| GO:0032608 | Interferon-beta production | ISS | biological_process |
| GO:0034340 | Response to type I interferon | ISS | biological_process |
| GO:0045087 | Innate immune response | TAS | biological_process |
| GO:0051607 | Defense response to virus | ISS | biological_process |
| GO:0070534 | Protein K63-linked ubiquitination | ISS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1229865583 | 0.6949640933 | 0.7172898737 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.0595113251 |
| GSE13712_SHEAR | Up | 0.7149205633 |
| GSE13712_STATIC | Up | 0.3917783619 |
| GSE19018 | Down | -0.2283366067 |
| GSE19899_A1 | Down | -0.1810947229 |
| GSE19899_A2 | Down | -0.4421728683 |
| PubMed_21979375_A1 | Down | -0.0538810358 |
| PubMed_21979375_A2 | Down | -0.3899457760 |
| GSE35957 | Down | -0.2685249453 |
| GSE36640 | Up | 0.0591780729 |
| GSE54402 | Up | 0.3890404506 |
| GSE9593 | Down | -0.0610832992 |
| GSE43922 | Up | 0.0496320003 |
| GSE24585 | Up | 0.3499381177 |
| GSE37065 | Up | 0.1639967202 |
| GSE28863_A1 | Up | 0.2310679769 |
| GSE28863_A2 | Up | 0.6794116392 |
| GSE28863_A3 | Up | 0.2814275427 |
| GSE28863_A4 | Down | -0.0803523511 |
| GSE48662 | Up | 0.1500391876 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
