HCSGD entry for RPAIN
1. General information
| Official gene symbol | RPAIN |
|---|---|
| Entrez ID | 84268 |
| Gene full name | RPA interacting protein |
| Other gene symbols | HRIP RIP |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IDA IEA | cellular_component |
| GO:0006261 | DNA-dependent DNA replication | IPI | biological_process |
| GO:0006281 | DNA repair | IPI | biological_process |
| GO:0006310 | DNA recombination | IPI | biological_process |
| GO:0006606 | Protein import into nucleus | IDA | biological_process |
| GO:0009411 | Response to UV | IDA | biological_process |
| GO:0016605 | PML body | IDA IEA | cellular_component |
| GO:0032403 | Protein complex binding | IPI | molecular_function |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6545456860 | 0.6518641655 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.1782122514 |
| GSE13712_SHEAR | Up | 0.0212419135 |
| GSE13712_STATIC | Down | -0.0851560228 |
| GSE19018 | Down | -0.2048815013 |
| GSE19899_A1 | Up | 0.1210171619 |
| GSE19899_A2 | Up | 0.0222411434 |
| PubMed_21979375_A1 | Up | 0.1617765822 |
| PubMed_21979375_A2 | Up | 0.0870483786 |
| GSE35957 | Down | -0.0728054016 |
| GSE36640 | Down | -0.1164261061 |
| GSE54402 | Up | 0.0924957547 |
| GSE9593 | Down | -0.1105241583 |
| GSE43922 | Up | 0.0952329879 |
| GSE24585 | Up | 0.1337090133 |
| GSE37065 | Up | 0.1200600089 |
| GSE28863_A1 | Down | -0.2566290732 |
| GSE28863_A2 | Down | -0.1163478735 |
| GSE28863_A3 | Down | -0.0998149676 |
| GSE28863_A4 | Up | 0.1410969285 |
| GSE48662 | Down | -0.2160044925 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-940 | MIMAT0004983 | MIRT036588 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-149-5p | MIMAT0000450 | MIRT045476 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-107 | MIMAT0000104 | MIRT048299 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049637 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
