HCSGD entry for COL27A1
1. General information
| Official gene symbol | COL27A1 |
|---|---|
| Entrez ID | 85301 |
| Gene full name | collagen, type XXVII, alpha 1 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005201 | Extracellular matrix structural constituent | IEA | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005583 | Fibrillar collagen | IEA | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
Entries Per Page
Displaying Page of
4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1732373732 | 0.6140515710 | 0.8174697258 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1665193214 |
| GSE13712_SHEAR | Up | 0.4013815464 |
| GSE13712_STATIC | Up | 0.0038721881 |
| GSE19018 | Down | -0.3985767690 |
| GSE19899_A1 | Up | 0.1906796310 |
| GSE19899_A2 | Up | 0.5759057974 |
| PubMed_21979375_A1 | Up | 0.5097957094 |
| PubMed_21979375_A2 | Up | 0.7918722832 |
| GSE35957 | Down | -0.3740959509 |
| GSE36640 | Up | 0.3714291808 |
| GSE54402 | Up | 0.1850462741 |
| GSE9593 | Down | -0.2172402412 |
| GSE43922 | Up | 0.1391297583 |
| GSE24585 | Down | -0.2875615494 |
| GSE37065 | Down | -0.1179919582 |
| GSE28863_A1 | Down | -0.1376166503 |
| GSE28863_A2 | Down | -0.1066994456 |
| GSE28863_A3 | Up | 0.3771125206 |
| GSE28863_A4 | Up | 0.1178432863 |
| GSE48662 | Down | -0.0240228470 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-181a-5p | MIMAT0000256 | MIRT025143 | Microarray | Functional MTI (Weak) | 17612493 |
| hsa-miR-18a-3p | MIMAT0002891 | MIRT040778 | CLASH | Functional MTI (Weak) | 23622248 |
Entries Per Page
Displaying Page of
- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
