HCSGD entry for SNX4
1. General information
| Official gene symbol | SNX4 |
|---|---|
| Entrez ID | 8723 |
| Gene full name | sorting nexin 4 |
| Other gene symbols | ATG24B |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | IDA | cellular_component |
| GO:0005868 | Cytoplasmic dynein complex | IDA | cellular_component |
| GO:0006897 | Endocytosis | TAS | biological_process |
| GO:0007154 | Cell communication | IEA | biological_process |
| GO:0015031 | Protein transport | IMP | biological_process |
| GO:0031901 | Early endosome membrane | IDA | cellular_component |
| GO:0032456 | Endocytic recycling | IMP | biological_process |
| GO:0035091 | Phosphatidylinositol binding | IEA IMP | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9798997151 | 0.0597904335 | 0.9999902473 | 0.4601590643 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1407040237 |
| GSE13712_SHEAR | Up | 0.0041813252 |
| GSE13712_STATIC | Down | -0.0139190661 |
| GSE19018 | Down | -0.1723228838 |
| GSE19899_A1 | Down | -0.3246113364 |
| GSE19899_A2 | Down | -0.0340546949 |
| PubMed_21979375_A1 | Up | 0.1254876910 |
| PubMed_21979375_A2 | Down | -0.5124504794 |
| GSE35957 | Up | 0.0797768231 |
| GSE36640 | Up | 0.1978824155 |
| GSE54402 | Down | -0.4380855119 |
| GSE9593 | Down | -0.3991633467 |
| GSE43922 | Up | 0.0184749502 |
| GSE24585 | Down | -0.2160649016 |
| GSE37065 | Down | -0.0087994504 |
| GSE28863_A1 | Down | -0.3718869215 |
| GSE28863_A2 | Up | 0.1759307343 |
| GSE28863_A3 | Down | -0.2675051970 |
| GSE28863_A4 | Down | -0.1073785406 |
| GSE48662 | Down | -0.3340709766 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-125a-5p | MIMAT0000443 | MIRT021294 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-10a-5p | MIMAT0000253 | MIRT025597 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-100-5p | MIMAT0000098 | MIRT048486 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
