HCSGD entry for TMEM55B
1. General information
| Official gene symbol | TMEM55B |
|---|---|
| Entrez ID | 90809 |
| Gene full name | transmembrane protein 55B |
| Other gene symbols | C14orf9 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005765 | Lysosomal membrane | IEA | cellular_component |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016787 | Hydrolase activity | IEA | molecular_function |
| GO:0031902 | Late endosome membrane | IEA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0373120132 | 0.9770224574 | 0.4364015514 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.6694722549 |
| GSE13712_SHEAR | Up | 0.0312338230 |
| GSE13712_STATIC | Down | -0.1991208367 |
| GSE19018 | Up | 0.0506316220 |
| GSE19899_A1 | Down | -0.0315284335 |
| GSE19899_A2 | Down | -0.0262859015 |
| PubMed_21979375_A1 | Up | 0.2822086977 |
| PubMed_21979375_A2 | Up | 0.1500037554 |
| GSE35957 | Up | 0.0736067926 |
| GSE36640 | Up | 0.3891441696 |
| GSE54402 | Up | 0.5235106191 |
| GSE9593 | Up | 0.6865077923 |
| GSE43922 | Up | 0.0678995832 |
| GSE24585 | Up | 0.1053095162 |
| GSE37065 | Up | 0.2516607448 |
| GSE28863_A1 | Up | 0.1077788468 |
| GSE28863_A2 | Up | 0.3716628411 |
| GSE28863_A3 | Up | 0.2164459133 |
| GSE28863_A4 | Down | -0.0606892939 |
| GSE48662 | Up | 0.1108163191 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-103a-3p | MIMAT0000101 | MIRT027112 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-16-5p | MIMAT0000069 | MIRT031583 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049299 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7b-5p | MIMAT0000063 | MIRT052148 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
