HCSGD entry for CTDP1
1. General information
| Official gene symbol | CTDP1 |
|---|---|
| Entrez ID | 9150 |
| Gene full name | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 |
| Other gene symbols | CCFDN FCP1 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in Literature mining network.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000922 | Spindle pole | IDA | cellular_component |
| GO:0003899 | DNA-directed RNA polymerase activity | TAS | molecular_function |
| GO:0004721 | Phosphoprotein phosphatase activity | IEA | molecular_function |
| GO:0005634 | Nucleus | IDA IEA | cellular_component |
| GO:0005654 | Nucleoplasm | TAS | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0005813 | Centrosome | IDA | cellular_component |
| GO:0005819 | Spindle | IDA | cellular_component |
| GO:0006366 | Transcription from RNA polymerase II promoter | TAS | biological_process |
| GO:0006368 | Transcription elongation from RNA polymerase II promoter | TAS | biological_process |
| GO:0006470 | Protein dephosphorylation | IDA | biological_process |
| GO:0008420 | CTD phosphatase activity | IDA | molecular_function |
| GO:0010458 | Exit from mitosis | IMP | biological_process |
| GO:0010467 | Gene expression | TAS | biological_process |
| GO:0015629 | Actin cytoskeleton | IDA | cellular_component |
| GO:0016032 | Viral process | TAS | biological_process |
| GO:0030496 | Midbody | IDA | cellular_component |
| GO:0050434 | Positive regulation of viral transcription | TAS | biological_process |
| GO:0051233 | Spindle midzone | IDA | cellular_component |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.1348981422 | 0.9627926788 | 0.7433389597 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0341135659 |
| GSE13712_SHEAR | Down | -0.1708012223 |
| GSE13712_STATIC | Up | 0.3467236744 |
| GSE19018 | Up | 0.0281285571 |
| GSE19899_A1 | Down | -0.1072291208 |
| GSE19899_A2 | Up | 0.5314653850 |
| PubMed_21979375_A1 | Up | 0.5426087766 |
| PubMed_21979375_A2 | Up | 0.3924971700 |
| GSE35957 | Up | 0.1193376557 |
| GSE36640 | Down | -0.1456927462 |
| GSE54402 | Up | 0.1604344786 |
| GSE9593 | Up | 0.0561223214 |
| GSE43922 | Up | 0.1533292862 |
| GSE24585 | Down | -0.1040425057 |
| GSE37065 | Up | 0.0504362527 |
| GSE28863_A1 | Up | 0.0768200214 |
| GSE28863_A2 | Up | 0.2378568607 |
| GSE28863_A3 | Up | 0.2560165900 |
| GSE28863_A4 | Up | 0.0570952503 |
| GSE48662 | Up | 0.1589445929 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT017032 | Microarray | Functional MTI (Weak) | 18185580 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041328 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7d-5p | MIMAT0000065 | MIRT051717 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7a-5p | MIMAT0000062 | MIRT052631 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
