HCSGD entry for HOTAIR


1. General information

Official gene symbolHOTAIR
Entrez ID100124700
Gene full nameHOX transcript antisense RNA
Other gene symbolsHOXAS HOXC-AS4 HOXC11-AS1 NCRNA00072
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

Not in the Gene Ontology

4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.54667499340.12850104480.99999024730.6902580783

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Up0.0610969703
GSE13712_SHEARDown-0.0710872819
GSE13712_STATICDown-0.2167856925
GSE19018Down-0.1929089408
GSE19899_A1Up0.3898880072
GSE19899_A2Up0.0656367813
PubMed_21979375_A1Up0.1329579163
PubMed_21979375_A2Up0.1306942287
GSE35957Down-0.2017990223
GSE36640Down-0.0446055175
GSE54402Up0.0117637692
GSE9593Up0.6352874121
GSE43922--
GSE24585--
GSE37065--
GSE28863_A1Down-0.4335144348
GSE28863_A2Down-0.7663146101
GSE28863_A3Down-0.4761077121
GSE28863_A4Up0.1656122164
GSE48662Up0.1201880333

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase
No target information from mirTarBase
    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: 2 abstracts the gene occurs.


PubMed ID of the article

Sentenece the gene occurs

27041570The transcription factor nuclear factor kappa B (NF-kappaB) and the long non-coding RNA (lncRNA) HOTAIR (HOX transcript antisense RNA) have diverse functional roles in cancer
27041570In this study, we show that upregulation of HOTAIR induced platinum resistance in ovarian cancer, and increased HOTAIR levels were observed in recurrent platinum-resistant ovarian tumors vs primary ovarian tumors
27041570To investigate the role of HOTAIR during DNA damage induced by platinum, we monitored double-strand breaks and show that HOTAIR expression results in sustained activation of DNA damage response (DDR) after platinum treatment
27041570We demonstrate that ectopic expression of HOTAIR induces NF-kappaB activation during DDR and interleukin-6 and interleukin-6 expression, both key NF-kappaB target genes
27041570We show that HOTAIR regulates activation of NF-kappaB by decreasing Ikappa-Balpha (NF-kappaB inhibitor) and establish that by inducing prolonged NF-kappaB activation and expression of NF-kappaB target genes during DNA damage, HOTAIR has a critical role in cellular senescence and platinum sensitivity
24326307Scaffold function of long non-coding RNA HOTAIR in protein ubiquitination
24326307Here we report a post-translational function for the lncRNA HOTAIR as an inducer of ubiquitin-mediated proteolysis
24326307HOTAIR associates with E3 ubiquitin ligases bearing RNA-binding domains, Dzip3 and Mex3b, as well as with their respective ubiquitination substrates, Ataxin-1 and Snurportin-1
24326307In this manner, HOTAIR facilitates the ubiquitination of Ataxin-1 by Dzip3 and Snurportin-1 by Mex3b in cells and in vitro, and accelerates their degradation
24326307HOTAIR levels are highly upregulated in senescent cells, causing rapid decay of targets Ataxin-1 and Snurportin-1, and preventing premature senescence
24326307These results uncover a role for a lncRNA, HOTAIR, as a platform for protein ubiquitination
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