HCSGD entry for CDH12
1. General information
| Official gene symbol | CDH12 |
|---|---|
| Entrez ID | 1010 |
| Gene full name | cadherin 12, type 2 (N-cadherin 2) |
| Other gene symbols | CDHB |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005509 | Calcium ion binding | IEA | molecular_function |
| GO:0005886 | Plasma membrane | IEA TAS | cellular_component |
| GO:0007156 | Homophilic cell adhesion | IEA | biological_process |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0034329 | Cell junction assembly | TAS | biological_process |
| GO:0034332 | Adherens junction organization | TAS | biological_process |
| GO:0045216 | Cell-cell junction organization | TAS | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.5849100186 | 0.3903600547 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.2127543561 |
| GSE13712_SHEAR | Down | -0.4291606445 |
| GSE13712_STATIC | Down | -0.8387850797 |
| GSE19018 | Up | 0.3850243006 |
| GSE19899_A1 | Up | 0.1622277390 |
| GSE19899_A2 | Up | 0.0208356687 |
| PubMed_21979375_A1 | Down | -0.0909577269 |
| PubMed_21979375_A2 | Up | 0.2571843870 |
| GSE35957 | Up | 0.0328482029 |
| GSE36640 | Down | -0.0189942160 |
| GSE54402 | Down | -0.0643140533 |
| GSE9593 | Down | -0.1727202213 |
| GSE43922 | Up | 0.0077613584 |
| GSE24585 | Down | -0.0919486424 |
| GSE37065 | Up | 0.0170651835 |
| GSE28863_A1 | Down | -0.1625666652 |
| GSE28863_A2 | Down | -0.0185455118 |
| GSE28863_A3 | Up | 0.2902260930 |
| GSE28863_A4 | Up | 0.0015518624 |
| GSE48662 | Up | 0.0398575212 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT023018 | Microarray | Functional MTI (Weak) | 18668037 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
