HCSGD entry for TFG
1. General information
| Official gene symbol | TFG |
|---|---|
| Entrez ID | 10342 |
| Gene full name | TRK-fused gene |
| Other gene symbols | HMSNP SPG57 TF6 TRKT3 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0004871 | Signal transducer activity | IMP | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005737 | Cytoplasm | NAS | cellular_component |
| GO:0007165 | Signal transduction | IMP | biological_process |
| GO:0008219 | Cell death | IEA | biological_process |
| GO:0042802 | Identical protein binding | IEA | molecular_function |
| GO:0043123 | Positive regulation of I-kappaB kinase/NF-kappaB signaling | IMP | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.6712167471 | 0.5514384142 | 0.9999902473 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0435029730 |
| GSE13712_SHEAR | Up | 0.0178521527 |
| GSE13712_STATIC | Up | 0.1033914214 |
| GSE19018 | Up | 0.0987044596 |
| GSE19899_A1 | Up | 0.0374767541 |
| GSE19899_A2 | Down | -0.0613035926 |
| PubMed_21979375_A1 | Down | -0.1436388408 |
| PubMed_21979375_A2 | Down | -0.4277871735 |
| GSE35957 | Up | 0.1425413905 |
| GSE36640 | Up | 0.2958592305 |
| GSE54402 | Down | -0.0003481363 |
| GSE9593 | Up | 0.1025417372 |
| GSE43922 | Up | 0.0417490138 |
| GSE24585 | Up | 0.0229828539 |
| GSE37065 | Up | 0.0364001374 |
| GSE28863_A1 | Up | 0.0669007697 |
| GSE28863_A2 | Up | 0.4482015654 |
| GSE28863_A3 | Down | -0.3531649394 |
| GSE28863_A4 | Down | -0.2725061657 |
| GSE48662 | Down | -0.2574758486 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-192-5p | MIMAT0000222 | MIRT004131 | Microarray | Functional MTI (Weak) | 16822819 |
| hsa-miR-877-3p | MIMAT0004950 | MIRT036854 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-193b-3p | MIMAT0002819 | MIRT041287 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-106a-5p | MIMAT0000103 | MIRT048315 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-92a-3p | MIMAT0000092 | MIRT049807 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
