HCSGD entry for RBPMS
1. General information
| Official gene symbol | RBPMS |
|---|---|
| Entrez ID | 11030 |
| Gene full name | RNA binding protein with multiple splicing |
| Other gene symbols | HERMES |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000166 | Nucleotide binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0003713 | Transcription coactivator activity | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IEA | cellular_component |
| GO:0005737 | Cytoplasm | IEA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0006355 | Regulation of transcription, DNA-templated | IEA | biological_process |
| GO:0006396 | RNA processing | TAS | biological_process |
| GO:0008143 | Poly(A) binding | IDA | molecular_function |
| GO:0010862 | Positive regulation of pathway-restricted SMAD protein phosphorylation | IDA | biological_process |
| GO:0060391 | Positive regulation of SMAD protein import into nucleus | IDA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9642818282 | 0.0218787736 | 0.9999902473 | 0.2852259534 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4951486858 |
| GSE13712_SHEAR | Up | 0.0603326123 |
| GSE13712_STATIC | Down | -0.0219262674 |
| GSE19018 | Down | -0.2901545625 |
| GSE19899_A1 | Down | -0.7684550665 |
| GSE19899_A2 | Down | -0.2737911958 |
| PubMed_21979375_A1 | Down | -1.1276715037 |
| PubMed_21979375_A2 | Up | 0.1205411377 |
| GSE35957 | Up | 0.2590081729 |
| GSE36640 | Down | -0.1116777842 |
| GSE54402 | Down | -0.5300889031 |
| GSE9593 | Up | 0.1573514692 |
| GSE43922 | Down | -0.5806786734 |
| GSE24585 | Down | -0.4625901345 |
| GSE37065 | Down | -0.0601681720 |
| GSE28863_A1 | Down | -0.2150607294 |
| GSE28863_A2 | Up | 0.2772186555 |
| GSE28863_A3 | Up | 0.1536981753 |
| GSE28863_A4 | Down | -0.0454059726 |
| GSE48662 | Down | -0.2404091154 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-124-3p | MIMAT0000422 | MIRT022396 | Microarray | Functional MTI (Weak) | 18668037 |
| hsa-miR-98-5p | MIMAT0000096 | MIRT027579 | Microarray | Functional MTI (Weak) | 19088304 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: 1 abstracts the gene occurs.
PubMed ID of the article | Sentenece the gene occurs |
|---|---|
| 24164458 | We found that IGFBP5 (insulin-like growth factor binding protein 5), PLAT (plasminogen activator), SNAI2 (snail homolog 2), JAG1 (jagged 1), SPRY4 (Sprouty homolog 4), and CD44 were upregulated, whereas CFB (complement factor B), VCAM1 (vascular cell adhesion molecule 1), AQP1 (aquaporin 1), LOXL1 (lysyl oxidase-like 1), and RBPMS (RNA-binding protein with multiple splicing) were down- regulated in both radiation-damaged and old cells |
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