HCSGD entry for PRDM5
1. General information
| Official gene symbol | PRDM5 |
|---|---|
| Entrez ID | 11107 |
| Gene full name | PR domain containing 5 |
| Other gene symbols | BCS2 PFM2 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0000278 | Mitotic cell cycle | IMP | biological_process |
| GO:0000976 | Transcription regulatory region sequence-specific DNA binding | IEA | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0006351 | Transcription, DNA-templated | IEA | biological_process |
| GO:0008168 | Methyltransferase activity | IEA | molecular_function |
| GO:0016575 | Histone deacetylation | IMP | biological_process |
| GO:0043565 | Sequence-specific DNA binding | IDA | molecular_function |
| GO:0044212 | Transcription regulatory region DNA binding | IDA | molecular_function |
| GO:0045892 | Negative regulation of transcription, DNA-templated | IDA | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
| GO:0051567 | Histone H3-K9 methylation | IDA | biological_process |
| GO:0070491 | Repressing transcription factor binding | IDA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9926258653 | 0.0157809050 | 0.9999902473 | 0.2457376700 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1547348525 |
| GSE13712_SHEAR | Down | -0.1611654770 |
| GSE13712_STATIC | Down | -0.1767229538 |
| GSE19018 | Down | -0.0396948694 |
| GSE19899_A1 | Down | -0.0142100570 |
| GSE19899_A2 | Down | -0.4037744788 |
| PubMed_21979375_A1 | Down | -0.1789689403 |
| PubMed_21979375_A2 | Down | -0.2944893718 |
| GSE35957 | Down | -0.3757557240 |
| GSE36640 | Down | -0.9532324236 |
| GSE54402 | Down | -0.5723051454 |
| GSE9593 | Down | -0.1601772208 |
| GSE43922 | Down | -1.1055421951 |
| GSE24585 | Up | 0.1242208425 |
| GSE37065 | Down | -0.1642181630 |
| GSE28863_A1 | Down | -0.0597465580 |
| GSE28863_A2 | Down | -0.0055936094 |
| GSE28863_A3 | Down | -0.4344861288 |
| GSE28863_A4 | Down | -0.1672949092 |
| GSE48662 | Down | -0.0245772882 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
