HCSGD entry for RNF19B
1. General information
| Official gene symbol | RNF19B |
|---|---|
| Entrez ID | 127544 |
| Gene full name | ring finger protein 19B |
| Other gene symbols | IBRDC3 NKLAM |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0008270 | Zinc ion binding | IEA | molecular_function |
| GO:0016021 | Integral component of membrane | IEA | cellular_component |
| GO:0016567 | Protein ubiquitination | IEA | biological_process |
| GO:0016874 | Ligase activity | IEA | molecular_function |
| GO:0042267 | Natural killer cell mediated cytotoxicity | IEA | biological_process |
| GO:0044194 | Cytolytic granule | IEA | cellular_component |
| GO:0072643 | Interferon-gamma secretion | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0001856806 | 0.9913104973 | 0.0397341463 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.9034962102 |
| GSE13712_SHEAR | Up | 1.1036296200 |
| GSE13712_STATIC | Up | 1.0926880831 |
| GSE19018 | Up | 0.1950553709 |
| GSE19899_A1 | Up | 0.8426891295 |
| GSE19899_A2 | Up | 2.9683227983 |
| PubMed_21979375_A1 | Up | 2.3322329170 |
| PubMed_21979375_A2 | Up | 3.9585195749 |
| GSE35957 | Down | -0.3454702108 |
| GSE36640 | Up | 0.6694496698 |
| GSE54402 | Up | 0.8033808941 |
| GSE9593 | Up | 0.4977735454 |
| GSE43922 | Up | 0.9902556278 |
| GSE24585 | Up | 0.5113450839 |
| GSE37065 | Up | 0.7803265431 |
| GSE28863_A1 | Down | -0.3006598203 |
| GSE28863_A2 | Up | 0.3401173749 |
| GSE28863_A3 | Down | -0.4519881984 |
| GSE28863_A4 | Down | -0.0704519182 |
| GSE48662 | Up | 0.1523380525 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT018297 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
