HCSGD entry for COL11A1


1. General information

Official gene symbolCOL11A1
Entrez ID1301
Gene full namecollagen, type XI, alpha 1
Other gene symbolsCO11A1 COLL6 STL2
Links to Entrez GeneLinks to Entrez Gene

2. Neighbors in the network

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This gene isn't in PPI subnetwork.

3. Gene ontology annotation

GO ID

GO term

Evidence

Category

GO:0001502Cartilage condensationIEAbiological_process
GO:0002063Chondrocyte developmentIEAbiological_process
GO:0005201Extracellular matrix structural constituentNASmolecular_function
GO:0005576Extracellular regionTAScellular_component
GO:0005592Collagen type XIIDA NAScellular_component
GO:0005788Endoplasmic reticulum lumenTAScellular_component
GO:0006029Proteoglycan metabolic processIEAbiological_process
GO:0007601Visual perceptionIMPbiological_process
GO:0007605Sensory perception of soundIMPbiological_process
GO:0022617Extracellular matrix disassemblyTASbiological_process
GO:0030198Extracellular matrix organizationNAS TASbiological_process
GO:0030199Collagen fibril organizationNASbiological_process
GO:0030574Collagen catabolic processTASbiological_process
GO:0030674Protein binding, bridgingNASmolecular_function
GO:0035989Tendon developmentIEAbiological_process
GO:0042472Inner ear morphogenesisIEAbiological_process
GO:0046872Metal ion bindingIEAmolecular_function
GO:0048704Embryonic skeletal system morphogenesisIEAbiological_process
GO:0050840Extracellular matrix bindingNASmolecular_function
GO:0050910Detection of mechanical stimulus involved in sensory perception of soundIMPbiological_process
GO:0055010Ventricular cardiac muscle tissue morphogenesisIEAbiological_process
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4. Expression levels in datasets

  • Meta-analysis result

p-value upp-value downFDR upFDR down
0.82684868360.00137577600.99999024730.0715648221

  • Individual experiment result
    ( "-" represent NA in the specific microarray platform )

Data sourceUp or downLog fold change
GSE11954Down-1.2101022025
GSE13712_SHEARDown-0.0611259725
GSE13712_STATICUp0.0064403419
GSE19018Down-0.6339096515
GSE19899_A1Down-0.2498799073
GSE19899_A2Down-1.8970799888
PubMed_21979375_A1Down-3.6309445541
PubMed_21979375_A2Down-2.7465641037
GSE35957Up1.3492532937
GSE36640Down-0.3217437351
GSE54402Down-0.7829696119
GSE9593Down-0.2880189586
GSE43922Down-0.3471078490
GSE24585Up0.0054582814
GSE37065Down-0.6842898770
GSE28863_A1Down-0.2773996296
GSE28863_A2Up0.1130938150
GSE28863_A3Up0.2010813028
GSE28863_A4Up0.0516445722
GSE48662Up0.4285597007

5. Regulation relationships with compounds/drugs/microRNAs

  • Compounds

Not regulated by compounds

  • Drugs

Not regulated by drugs

  • MicroRNAs

    • mirTarBase

MiRNA_name

mirBase ID

miRTarBase ID

Experiment

Support type

References (Pubmed ID)

hsa-miR-335-5pMIMAT0000765MIRT017414MicroarrayFunctional MTI (Weak)18185580
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    • mirRecord
No target information from mirRecord

6. Text-mining results about the gene

Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.