HCSGD entry for COL16A1
1. General information
| Official gene symbol | COL16A1 |
|---|---|
| Entrez ID | 1307 |
| Gene full name | collagen, type XVI, alpha 1 |
| Other gene symbols | 447AA |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005178 | Integrin binding | IDA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005576 | Extracellular region | TAS | cellular_component |
| GO:0005597 | Collagen type XVI | TAS | cellular_component |
| GO:0005788 | Endoplasmic reticulum lumen | TAS | cellular_component |
| GO:0007155 | Cell adhesion | IDA | biological_process |
| GO:0007229 | Integrin-mediated signaling pathway | TAS | biological_process |
| GO:0007565 | Female pregnancy | TAS | biological_process |
| GO:0022617 | Extracellular matrix disassembly | TAS | biological_process |
| GO:0030198 | Extracellular matrix organization | TAS | biological_process |
| GO:0030574 | Collagen catabolic process | TAS | biological_process |
| GO:0071230 | Cellular response to amino acid stimulus | IEA | biological_process |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.9904068728 | 0.0013802705 | 0.9999902473 | 0.0716570020 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.4888754835 |
| GSE13712_SHEAR | Down | -0.5972068787 |
| GSE13712_STATIC | Down | -0.3321498789 |
| GSE19018 | Down | -1.1493242068 |
| GSE19899_A1 | Down | -1.4771939386 |
| GSE19899_A2 | Down | -1.3035821514 |
| PubMed_21979375_A1 | Down | -1.2528704960 |
| PubMed_21979375_A2 | Down | -1.3000642195 |
| GSE35957 | Down | -0.2429878657 |
| GSE36640 | Down | -0.7560983661 |
| GSE54402 | Down | -0.5412668748 |
| GSE9593 | Down | -1.8668744345 |
| GSE43922 | Up | 0.0110685896 |
| GSE24585 | Up | 0.0782019488 |
| GSE37065 | Down | -0.2969865537 |
| GSE28863_A1 | Up | 0.2472053186 |
| GSE28863_A2 | Up | 0.3480791465 |
| GSE28863_A3 | Up | 0.1576977210 |
| GSE28863_A4 | Down | -0.0649532202 |
| GSE48662 | Down | -0.0381146343 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
No target information from mirTarBase
- mirTarBase
- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
