HCSGD entry for SH3D19
1. General information
| Official gene symbol | SH3D19 |
|---|---|
| Entrez ID | 152503 |
| Gene full name | SH3 domain containing 19 |
| Other gene symbols | EBP EVE1 Kryn SH3P19 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | IDA | cellular_component |
| GO:0005730 | Nucleolus | IDA | cellular_component |
| GO:0005794 | Golgi apparatus | IDA | cellular_component |
| GO:0005829 | Cytosol | TAS | cellular_component |
| GO:0005886 | Plasma membrane | IDA | cellular_component |
| GO:0006892 | Post-Golgi vesicle-mediated transport | TAS | biological_process |
| GO:0007010 | Cytoskeleton organization | IMP | biological_process |
| GO:0022604 | Regulation of cell morphogenesis | IMP | biological_process |
| GO:0051044 | Positive regulation of membrane protein ectodomain proteolysis | IMP | biological_process |
| GO:0070064 | Proline-rich region binding | IPI | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.8887266593 | 0.0095596824 | 0.9999902473 | 0.1937031563 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -0.1324586694 |
| GSE13712_SHEAR | Down | -0.5255756684 |
| GSE13712_STATIC | Down | -0.4932659422 |
| GSE19018 | Down | -0.0409662584 |
| GSE19899_A1 | Down | -0.4831014820 |
| GSE19899_A2 | Down | -1.3363704655 |
| PubMed_21979375_A1 | Down | -1.7574927230 |
| PubMed_21979375_A2 | Down | -0.5910395847 |
| GSE35957 | Up | 0.7524061234 |
| GSE36640 | Up | 0.2334212335 |
| GSE54402 | Down | -0.9101717641 |
| GSE9593 | Up | 0.7604503644 |
| GSE43922 | Down | -1.0429089831 |
| GSE24585 | Down | -0.2465801890 |
| GSE37065 | Down | -0.0475750049 |
| GSE28863_A1 | Up | 0.1221351717 |
| GSE28863_A2 | Up | 0.2327518667 |
| GSE28863_A3 | Up | 0.1628516547 |
| GSE28863_A4 | Down | -0.2677744704 |
| GSE48662 | Down | -0.4507041877 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-375 | MIMAT0000728 | MIRT019905 | Microarray | Functional MTI (Weak) | 20215506 |
| hsa-miR-128-3p | MIMAT0000424 | MIRT045870 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-miR-183-5p | MIMAT0000261 | MIRT047081 | CLASH | Functional MTI (Weak) | 23622248 |
| hsa-let-7c-5p | MIMAT0000064 | MIRT051806 | CLASH | Functional MTI (Weak) | 23622248 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
