HCSGD entry for SYNPO2
1. General information
| Official gene symbol | SYNPO2 |
|---|---|
| Entrez ID | 171024 |
| Gene full name | synaptopodin 2 |
| Other gene symbols | |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003779 | Actin binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005634 | Nucleus | ISS | cellular_component |
| GO:0015629 | Actin cytoskeleton | IDA | cellular_component |
| GO:0030018 | Z disc | ISS | cellular_component |
| GO:0051371 | Muscle alpha-actinin binding | ISS | molecular_function |
| GO:0071889 | 14-3-3 protein binding | ISS | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.2764685080 | 0.0084329205 | 0.9731335919 | 0.1841600989 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Down | -1.6063253310 |
| GSE13712_SHEAR | Up | 0.1879283098 |
| GSE13712_STATIC | Up | 0.1234994669 |
| GSE19018 | Down | -0.4168193231 |
| GSE19899_A1 | Down | -0.3622480640 |
| GSE19899_A2 | Down | -0.6274257602 |
| PubMed_21979375_A1 | Down | -0.7849352601 |
| PubMed_21979375_A2 | Down | -0.3575365649 |
| GSE35957 | Up | 0.7605323064 |
| GSE36640 | Up | 3.7133502552 |
| GSE54402 | Down | -1.1476677613 |
| GSE9593 | Down | -0.2136559680 |
| GSE43922 | Down | -0.1918699883 |
| GSE24585 | Down | -0.0215023228 |
| GSE37065 | Up | 0.1453479293 |
| GSE28863_A1 | Up | 0.3249875262 |
| GSE28863_A2 | Up | 0.1231873632 |
| GSE28863_A3 | Down | -0.0963326080 |
| GSE28863_A4 | Down | -0.5464854059 |
| GSE48662 | Up | 0.0159423749 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-335-5p | MIMAT0000765 | MIRT016748 | Microarray | Functional MTI (Weak) | 18185580 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
