HCSGD entry for GPATCH8
1. General information
| Official gene symbol | GPATCH8 |
|---|---|
| Entrez ID | 23131 |
| Gene full name | G patch domain containing 8 |
| Other gene symbols | GPATC8 KIAA0553 |
| Links to Entrez Gene | Links to Entrez Gene |
2. Neighbors in the network
This gene isn't in PPI subnetwork.
3. Gene ontology annotation
GO ID | GO term | Evidence | Category |
|---|---|---|---|
| GO:0003674 | Molecular_function | ND | molecular_function |
| GO:0003676 | Nucleic acid binding | IEA | molecular_function |
| GO:0005515 | Protein binding | IPI | molecular_function |
| GO:0005575 | Cellular_component | ND | cellular_component |
| GO:0008150 | Biological_process | ND | biological_process |
| GO:0046872 | Metal ion binding | IEA | molecular_function |
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4. Expression levels in datasets
- Meta-analysis result
| p-value up | p-value down | FDR up | FDR down |
|---|---|---|---|
| 0.0856760533 | 0.9301591847 | 0.6141283769 | 1.0000000000 |
- Individual experiment result
( "-" represent NA in the specific microarray platform )
( "-" represent NA in the specific microarray platform )
| Data source | Up or down | Log fold change |
|---|---|---|
| GSE11954 | Up | 0.0548348374 |
| GSE13712_SHEAR | Down | -0.0543583983 |
| GSE13712_STATIC | Down | -0.1235534968 |
| GSE19018 | Up | 0.0219967337 |
| GSE19899_A1 | Up | 0.2915844496 |
| GSE19899_A2 | Up | 0.0189265507 |
| PubMed_21979375_A1 | Up | 0.0205729633 |
| PubMed_21979375_A2 | Up | 0.9111616724 |
| GSE35957 | Down | -0.0325026294 |
| GSE36640 | Down | -0.0789347167 |
| GSE54402 | Up | 0.1986269877 |
| GSE9593 | Down | -0.1212008523 |
| GSE43922 | Up | 0.0250821236 |
| GSE24585 | Up | 0.1021138178 |
| GSE37065 | Up | 0.1689275440 |
| GSE28863_A1 | Up | 0.7433773188 |
| GSE28863_A2 | Up | 0.5501333661 |
| GSE28863_A3 | Up | 0.1751437773 |
| GSE28863_A4 | Up | 0.0906098739 |
| GSE48662 | Down | -0.1999662743 |
5. Regulation relationships with compounds/drugs/microRNAs
- Compounds
Not regulated by compounds
- Drugs
Not regulated by drugs
- MicroRNAs
- mirTarBase
- mirTarBase
MiRNA_name | mirBase ID | miRTarBase ID | Experiment | Support type | References (Pubmed ID) |
|---|---|---|---|---|---|
| hsa-miR-590-3p | MIMAT0004801 | MIRT016158 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-130b-3p | MIMAT0000691 | MIRT020246 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-148a-3p | MIMAT0000243 | MIRT025970 | Sequencing | Functional MTI (Weak) | 20371350 |
| hsa-miR-19b-3p | MIMAT0000074 | MIRT031224 | Sequencing | Functional MTI (Weak) | 20371350 |
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- mirRecord
No target information from mirRecord
- mirRecord
6. Text-mining results about the gene
Gene occurances in abstracts of cellular senescence-associated articles: This gene isn't in text-mining gene-sentence result.
